-----------------------
Start of variable list:
-----------------------
Sample_ID:
D7-MAA000907-3_11_M-1-1
Dataset_DIR:
/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq
Sample_Labels_DIR:
/restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/Scripts/00_Setup_Pipeline
-----------------------
End of variable list
-----------------------
==========================================================
Starting on : Fri Oct 12 20:41:02 EDT 2018
Running on node : scc-ka2
Current directory : /restricted/projectnb/waxmanlab/kkarri/tabula_muris/smartseq_fastq/Scripts/03_Read_Length
Current job ID : 8791981
Current job name : Step_03_D7-MAA000907-3_11_M-1-1
Task index number : undefined
Parameter for multiple cores : 1
==========================================================

Change dir to scratch directory


Print scratch directory location:

/scratch/8791981.1.linga

Loading required modules...


List files in scratch directory:

total 30M
drwx------    2 kkarri waxmanlab 4.0K Oct 12 20:41 .
drwxrwxrwt. 132 root   root      116K Oct 12 20:41 ..
-rw-r--r--    1 kkarri waxmanlab  15M Oct 12 20:41 SRR6576234_1.fastq.gz
-rw-r--r--    1 kkarri waxmanlab  15M Oct 12 20:41 SRR6576234_2.fastq.gz

Starting to run my commands


Unzip files:


Finished unzipping


Starting Read Length


Processing SRR6576234_1.fastq


Processing SRR6576234_2.fastq


Ending Read Length


List files in scratch

total 146M
drwx------    2 kkarri waxmanlab 4.0K Oct 12 20:41 .
drwxrwxrwt. 132 root   root      116K Oct 12 20:41 ..
-rw-r--r--    1 kkarri waxmanlab  73M Oct 12 20:41 SRR6576234_1.fastq
-rw-r--r--    1 kkarri waxmanlab  73M Oct 12 20:41 SRR6576234_2.fastq
==========================================================
Finished on : Fri Oct 12 20:41:08 EDT 2018
0 hours, 0 minutes and 6 seconds elapsed.
==========================================================