Status G123_M1_Read_Count Aligned_Pairs Ratio G123_M1_assign_all_features: Status G123_M1_sorted.bam 17046217 0 Assigned 66004 17046217 0.00387206 Unassigned_Ambiguity 0 17046217 0 Unassigned_MultiMapping 0 17046217 0 Unassigned_NoFeatures 16854984 17046217 0.988781 Unassigned_Unmapped 0 17046217 0 Unassigned_MappingQuality 0 17046217 0 Unassigned_FragmentLength 0 17046217 0 Unassigned_Chimera 0 17046217 0 Unassigned_Secondary 0 17046217 0 Unassigned_Nonjunction 0 17046217 0 Unassigned_Duplicate 0 17046217 0 G123_M1_assign_only1_feature: Status G123_M1_sorted.bam 17046217 0 Assigned 10258696 17046217 0.601817 Unassigned_Ambiguity 62057 17046217 0.00364051 Unassigned_MultiMapping 0 17046217 0 Unassigned_NoFeatures 6600235 17046217 0.387196 Unassigned_Unmapped 0 17046217 0 Unassigned_MappingQuality 0 17046217 0 Unassigned_FragmentLength 0 17046217 0 Unassigned_Chimera 0 17046217 0 Unassigned_Secondary 0 17046217 0 Unassigned_Nonjunction 0 17046217 0 Unassigned_Duplicate 0 17046217 0 Status G123_M2_Read_Count Aligned_Pairs Ratio G123_M2_assign_all_features: Status G123_M2_sorted.bam 15070424 0 Assigned 58518 15070424 0.00388297 Unassigned_Ambiguity 0 15070424 0 Unassigned_MultiMapping 0 15070424 0 Unassigned_NoFeatures 14979658 15070424 0.993977 Unassigned_Unmapped 0 15070424 0 Unassigned_MappingQuality 0 15070424 0 Unassigned_FragmentLength 0 15070424 0 Unassigned_Chimera 0 15070424 0 Unassigned_Secondary 0 15070424 0 Unassigned_Nonjunction 0 15070424 0 Unassigned_Duplicate 0 15070424 0 G123_M2_assign_only1_feature: Status G123_M2_sorted.bam 15070424 0 Assigned 9130391 15070424 0.605848 Unassigned_Ambiguity 52643 15070424 0.00349313 Unassigned_MultiMapping 0 15070424 0 Unassigned_NoFeatures 5855142 15070424 0.388519 Unassigned_Unmapped 0 15070424 0 Unassigned_MappingQuality 0 15070424 0 Unassigned_FragmentLength 0 15070424 0 Unassigned_Chimera 0 15070424 0 Unassigned_Secondary 0 15070424 0 Unassigned_Nonjunction 0 15070424 0 Unassigned_Duplicate 0 15070424 0 Status G123_M3_Read_Count Aligned_Pairs Ratio G123_M3_assign_all_features: Status G123_M3_sorted.bam 16088496 0 Assigned 64991 16088496 0.00403959 Unassigned_Ambiguity 0 16088496 0 Unassigned_MultiMapping 0 16088496 0 Unassigned_NoFeatures 15729915 16088496 0.977712 Unassigned_Unmapped 0 16088496 0 Unassigned_MappingQuality 0 16088496 0 Unassigned_FragmentLength 0 16088496 0 Unassigned_Chimera 0 16088496 0 Unassigned_Secondary 0 16088496 0 Unassigned_Nonjunction 0 16088496 0 Unassigned_Duplicate 0 16088496 0 G123_M3_assign_only1_feature: Status G123_M3_sorted.bam 16088496 0 Assigned 9569351 16088496 0.594795 Unassigned_Ambiguity 63841 16088496 0.00396811 Unassigned_MultiMapping 0 16088496 0 Unassigned_NoFeatures 6161714 16088496 0.382989 Unassigned_Unmapped 0 16088496 0 Unassigned_MappingQuality 0 16088496 0 Unassigned_FragmentLength 0 16088496 0 Unassigned_Chimera 0 16088496 0 Unassigned_Secondary 0 16088496 0 Unassigned_Nonjunction 0 16088496 0 Unassigned_Duplicate 0 16088496 0 Status G123_M4_Read_Count Aligned_Pairs Ratio G123_M4_assign_all_features: Status G123_M4_sorted.bam 24502656 0 Assigned 94703 24502656 0.00386501 Unassigned_Ambiguity 0 24502656 0 Unassigned_MultiMapping 0 24502656 0 Unassigned_NoFeatures 24011104 24502656 0.979939 Unassigned_Unmapped 0 24502656 0 Unassigned_MappingQuality 0 24502656 0 Unassigned_FragmentLength 0 24502656 0 Unassigned_Chimera 0 24502656 0 Unassigned_Secondary 0 24502656 0 Unassigned_Nonjunction 0 24502656 0 Unassigned_Duplicate 0 24502656 0 G123_M4_assign_only1_feature: Status G123_M4_sorted.bam 24502656 0 Assigned 14583093 24502656 0.595164 Unassigned_Ambiguity 94147 24502656 0.00384232 Unassigned_MultiMapping 0 24502656 0 Unassigned_NoFeatures 9428567 24502656 0.384798 Unassigned_Unmapped 0 24502656 0 Unassigned_MappingQuality 0 24502656 0 Unassigned_FragmentLength 0 24502656 0 Unassigned_Chimera 0 24502656 0 Unassigned_Secondary 0 24502656 0 Unassigned_Nonjunction 0 24502656 0 Unassigned_Duplicate 0 24502656 0 Status G123_M5_Read_Count Aligned_Pairs Ratio G123_M5_assign_all_features: Status G123_M5_sorted.bam 15011211 0 Assigned 54844 15011211 0.00365354 Unassigned_Ambiguity 0 15011211 0 Unassigned_MultiMapping 0 15011211 0 Unassigned_NoFeatures 15112137 15011211 1.00672 Unassigned_Unmapped 0 15011211 0 Unassigned_MappingQuality 0 15011211 0 Unassigned_FragmentLength 0 15011211 0 Unassigned_Chimera 0 15011211 0 Unassigned_Secondary 0 15011211 0 Unassigned_Nonjunction 0 15011211 0 Unassigned_Duplicate 0 15011211 0 G123_M5_assign_only1_feature: Status G123_M5_sorted.bam 15011211 0 Assigned 9277220 15011211 0.618019 Unassigned_Ambiguity 55305 15011211 0.00368425 Unassigned_MultiMapping 0 15011211 0 Unassigned_NoFeatures 5834456 15011211 0.388673 Unassigned_Unmapped 0 15011211 0 Unassigned_MappingQuality 0 15011211 0 Unassigned_FragmentLength 0 15011211 0 Unassigned_Chimera 0 15011211 0 Unassigned_Secondary 0 15011211 0 Unassigned_Nonjunction 0 15011211 0 Unassigned_Duplicate 0 15011211 0 Status G123_M6_Read_Count Aligned_Pairs Ratio G123_M6_assign_all_features: Status G123_M6_sorted.bam 20902747 0 Assigned 76753 20902747 0.00367191 Unassigned_Ambiguity 0 20902747 0 Unassigned_MultiMapping 0 20902747 0 Unassigned_NoFeatures 20992848 20902747 1.00431 Unassigned_Unmapped 0 20902747 0 Unassigned_MappingQuality 0 20902747 0 Unassigned_FragmentLength 0 20902747 0 Unassigned_Chimera 0 20902747 0 Unassigned_Secondary 0 20902747 0 Unassigned_Nonjunction 0 20902747 0 Unassigned_Duplicate 0 20902747 0 G123_M6_assign_only1_feature: Status G123_M6_sorted.bam 20902747 0 Assigned 12806022 20902747 0.612648 Unassigned_Ambiguity 84349 20902747 0.00403531 Unassigned_MultiMapping 0 20902747 0 Unassigned_NoFeatures 8179230 20902747 0.391299 Unassigned_Unmapped 0 20902747 0 Unassigned_MappingQuality 0 20902747 0 Unassigned_FragmentLength 0 20902747 0 Unassigned_Chimera 0 20902747 0 Unassigned_Secondary 0 20902747 0 Unassigned_Nonjunction 0 20902747 0 Unassigned_Duplicate 0 20902747 0 Status G123_M7_Read_Count Aligned_Pairs Ratio G123_M7_assign_all_features: Status G123_M7_sorted.bam 17754367 0 Assigned 68395 17754367 0.00385229 Unassigned_Ambiguity 0 17754367 0 Unassigned_MultiMapping 0 17754367 0 Unassigned_NoFeatures 17645134 17754367 0.993848 Unassigned_Unmapped 0 17754367 0 Unassigned_MappingQuality 0 17754367 0 Unassigned_FragmentLength 0 17754367 0 Unassigned_Chimera 0 17754367 0 Unassigned_Secondary 0 17754367 0 Unassigned_Nonjunction 0 17754367 0 Unassigned_Duplicate 0 17754367 0 G123_M7_assign_only1_feature: Status G123_M7_sorted.bam 17754367 0 Assigned 10160360 17754367 0.572274 Unassigned_Ambiguity 64886 17754367 0.00365465 Unassigned_MultiMapping 0 17754367 0 Unassigned_NoFeatures 7488283 17754367 0.421771 Unassigned_Unmapped 0 17754367 0 Unassigned_MappingQuality 0 17754367 0 Unassigned_FragmentLength 0 17754367 0 Unassigned_Chimera 0 17754367 0 Unassigned_Secondary 0 17754367 0 Unassigned_Nonjunction 0 17754367 0 Unassigned_Duplicate 0 17754367 0 Status G123_M8_Read_Count Aligned_Pairs Ratio G123_M8_assign_all_features: Status G123_M8_sorted.bam 16571376 0 Assigned 63184 16571376 0.00381284 Unassigned_Ambiguity 0 16571376 0 Unassigned_MultiMapping 0 16571376 0 Unassigned_NoFeatures 16503634 16571376 0.995912 Unassigned_Unmapped 0 16571376 0 Unassigned_MappingQuality 0 16571376 0 Unassigned_FragmentLength 0 16571376 0 Unassigned_Chimera 0 16571376 0 Unassigned_Secondary 0 16571376 0 Unassigned_Nonjunction 0 16571376 0 Unassigned_Duplicate 0 16571376 0 G123_M8_assign_only1_feature: Status G123_M8_sorted.bam 16571376 0 Assigned 9667418 16571376 0.583381 Unassigned_Ambiguity 63247 16571376 0.00381664 Unassigned_MultiMapping 0 16571376 0 Unassigned_NoFeatures 6836153 16571376 0.412528 Unassigned_Unmapped 0 16571376 0 Unassigned_MappingQuality 0 16571376 0 Unassigned_FragmentLength 0 16571376 0 Unassigned_Chimera 0 16571376 0 Unassigned_Secondary 0 16571376 0 Unassigned_Nonjunction 0 16571376 0 Unassigned_Duplicate 0 16571376 0 Status G123_M9_Read_Count Aligned_Pairs Ratio G123_M9_assign_all_features: Status G123_M9_sorted.bam 16325838 0 Assigned 61279 16325838 0.0037535 Unassigned_Ambiguity 0 16325838 0 Unassigned_MultiMapping 0 16325838 0 Unassigned_NoFeatures 16434989 16325838 1.00669 Unassigned_Unmapped 0 16325838 0 Unassigned_MappingQuality 0 16325838 0 Unassigned_FragmentLength 0 16325838 0 Unassigned_Chimera 0 16325838 0 Unassigned_Secondary 0 16325838 0 Unassigned_Nonjunction 0 16325838 0 Unassigned_Duplicate 0 16325838 0 G123_M9_assign_only1_feature: Status G123_M9_sorted.bam 16325838 0 Assigned 10321579 16325838 0.632224 Unassigned_Ambiguity 69029 16325838 0.00422821 Unassigned_MultiMapping 0 16325838 0 Unassigned_NoFeatures 6105660 16325838 0.373988 Unassigned_Unmapped 0 16325838 0 Unassigned_MappingQuality 0 16325838 0 Unassigned_FragmentLength 0 16325838 0 Unassigned_Chimera 0 16325838 0 Unassigned_Secondary 0 16325838 0 Unassigned_Nonjunction 0 16325838 0 Unassigned_Duplicate 0 16325838 0 Status G123_M10_Read_Count Aligned_Pairs Ratio G123_M10_assign_all_features: Status G123_M10_sorted.bam 16035662 0 Assigned 61582 16035662 0.00384032 Unassigned_Ambiguity 0 16035662 0 Unassigned_MultiMapping 0 16035662 0 Unassigned_NoFeatures 16147492 16035662 1.00697 Unassigned_Unmapped 0 16035662 0 Unassigned_MappingQuality 0 16035662 0 Unassigned_FragmentLength 0 16035662 0 Unassigned_Chimera 0 16035662 0 Unassigned_Secondary 0 16035662 0 Unassigned_Nonjunction 0 16035662 0 Unassigned_Duplicate 0 16035662 0 G123_M10_assign_only1_feature: Status G123_M10_sorted.bam 16035662 0 Assigned 10023205 16035662 0.625057 Unassigned_Ambiguity 64673 16035662 0.00403307 Unassigned_MultiMapping 0 16035662 0 Unassigned_NoFeatures 6121196 16035662 0.381724 Unassigned_Unmapped 0 16035662 0 Unassigned_MappingQuality 0 16035662 0 Unassigned_FragmentLength 0 16035662 0 Unassigned_Chimera 0 16035662 0 Unassigned_Secondary 0 16035662 0 Unassigned_Nonjunction 0 16035662 0 Unassigned_Duplicate 0 16035662 0 Status G123_M11_Read_Count Aligned_Pairs Ratio G123_M11_assign_all_features: Status G123_M11_sorted.bam 13043739 0 Assigned 49641 13043739 0.00380573 Unassigned_Ambiguity 0 13043739 0 Unassigned_MultiMapping 0 13043739 0 Unassigned_NoFeatures 13081557 13043739 1.0029 Unassigned_Unmapped 0 13043739 0 Unassigned_MappingQuality 0 13043739 0 Unassigned_FragmentLength 0 13043739 0 Unassigned_Chimera 0 13043739 0 Unassigned_Secondary 0 13043739 0 Unassigned_Nonjunction 0 13043739 0 Unassigned_Duplicate 0 13043739 0 G123_M11_assign_only1_feature: Status G123_M11_sorted.bam 13043739 0 Assigned 8049179 13043739 0.617091 Unassigned_Ambiguity 54346 13043739 0.00416644 Unassigned_MultiMapping 0 13043739 0 Unassigned_NoFeatures 5027673 13043739 0.385447 Unassigned_Unmapped 0 13043739 0 Unassigned_MappingQuality 0 13043739 0 Unassigned_FragmentLength 0 13043739 0 Unassigned_Chimera 0 13043739 0 Unassigned_Secondary 0 13043739 0 Unassigned_Nonjunction 0 13043739 0 Unassigned_Duplicate 0 13043739 0 Status G123_M12_Read_Count Aligned_Pairs Ratio G123_M12_assign_all_features: Status G123_M12_sorted.bam 17260806 0 Assigned 70399 17260806 0.00407855 Unassigned_Ambiguity 0 17260806 0 Unassigned_MultiMapping 0 17260806 0 Unassigned_NoFeatures 17303319 17260806 1.00246 Unassigned_Unmapped 0 17260806 0 Unassigned_MappingQuality 0 17260806 0 Unassigned_FragmentLength 0 17260806 0 Unassigned_Chimera 0 17260806 0 Unassigned_Secondary 0 17260806 0 Unassigned_Nonjunction 0 17260806 0 Unassigned_Duplicate 0 17260806 0 G123_M12_assign_only1_feature: Status G123_M12_sorted.bam 17260806 0 Assigned 10373103 17260806 0.600963 Unassigned_Ambiguity 68931 17260806 0.0039935 Unassigned_MultiMapping 0 17260806 0 Unassigned_NoFeatures 6931684 17260806 0.401585 Unassigned_Unmapped 0 17260806 0 Unassigned_MappingQuality 0 17260806 0 Unassigned_FragmentLength 0 17260806 0 Unassigned_Chimera 0 17260806 0 Unassigned_Secondary 0 17260806 0 Unassigned_Nonjunction 0 17260806 0 Unassigned_Duplicate 0 17260806 0 Status G123_M13_Read_Count Aligned_Pairs Ratio G123_M13_assign_all_features: Status G123_M13_sorted.bam 18104500 0 Assigned 66781 18104500 0.00368864 Unassigned_Ambiguity 0 18104500 0 Unassigned_MultiMapping 0 18104500 0 Unassigned_NoFeatures 18497132 18104500 1.02169 Unassigned_Unmapped 0 18104500 0 Unassigned_MappingQuality 0 18104500 0 Unassigned_FragmentLength 0 18104500 0 Unassigned_Chimera 0 18104500 0 Unassigned_Secondary 0 18104500 0 Unassigned_Nonjunction 0 18104500 0 Unassigned_Duplicate 0 18104500 0 G123_M13_assign_only1_feature: Status G123_M13_sorted.bam 18104500 0 Assigned 12232481 18104500 0.67566 Unassigned_Ambiguity 75704 18104500 0.0041815 Unassigned_MultiMapping 0 18104500 0 Unassigned_NoFeatures 6255728 18104500 0.345534 Unassigned_Unmapped 0 18104500 0 Unassigned_MappingQuality 0 18104500 0 Unassigned_FragmentLength 0 18104500 0 Unassigned_Chimera 0 18104500 0 Unassigned_Secondary 0 18104500 0 Unassigned_Nonjunction 0 18104500 0 Unassigned_Duplicate 0 18104500 0 Status G123_M14_Read_Count Aligned_Pairs Ratio G123_M14_assign_all_features: Status G123_M14_sorted.bam 13575702 0 Assigned 54029 13575702 0.00397983 Unassigned_Ambiguity 0 13575702 0 Unassigned_MultiMapping 0 13575702 0 Unassigned_NoFeatures 13869503 13575702 1.02164 Unassigned_Unmapped 0 13575702 0 Unassigned_MappingQuality 0 13575702 0 Unassigned_FragmentLength 0 13575702 0 Unassigned_Chimera 0 13575702 0 Unassigned_Secondary 0 13575702 0 Unassigned_Nonjunction 0 13575702 0 Unassigned_Duplicate 0 13575702 0 G123_M14_assign_only1_feature: Status G123_M14_sorted.bam 13575702 0 Assigned 9381518 13575702 0.691052 Unassigned_Ambiguity 63295 13575702 0.00466237 Unassigned_MultiMapping 0 13575702 0 Unassigned_NoFeatures 4478719 13575702 0.329907 Unassigned_Unmapped 0 13575702 0 Unassigned_MappingQuality 0 13575702 0 Unassigned_FragmentLength 0 13575702 0 Unassigned_Chimera 0 13575702 0 Unassigned_Secondary 0 13575702 0 Unassigned_Nonjunction 0 13575702 0 Unassigned_Duplicate 0 13575702 0 Status G123_M15_Read_Count Aligned_Pairs Ratio G123_M15_assign_all_features: Status G123_M15_sorted.bam 15201827 0 Assigned 61301 15201827 0.00403248 Unassigned_Ambiguity 0 15201827 0 Unassigned_MultiMapping 0 15201827 0 Unassigned_NoFeatures 15305467 15201827 1.00682 Unassigned_Unmapped 0 15201827 0 Unassigned_MappingQuality 0 15201827 0 Unassigned_FragmentLength 0 15201827 0 Unassigned_Chimera 0 15201827 0 Unassigned_Secondary 0 15201827 0 Unassigned_Nonjunction 0 15201827 0 Unassigned_Duplicate 0 15201827 0 G123_M15_assign_only1_feature: Status G123_M15_sorted.bam 15201827 0 Assigned 9388663 15201827 0.617601 Unassigned_Ambiguity 68387 15201827 0.0044986 Unassigned_MultiMapping 0 15201827 0 Unassigned_NoFeatures 5909718 15201827 0.388751 Unassigned_Unmapped 0 15201827 0 Unassigned_MappingQuality 0 15201827 0 Unassigned_FragmentLength 0 15201827 0 Unassigned_Chimera 0 15201827 0 Unassigned_Secondary 0 15201827 0 Unassigned_Nonjunction 0 15201827 0 Unassigned_Duplicate 0 15201827 0 Status G123_M16_Read_Count Aligned_Pairs Ratio G123_M16_assign_all_features: Status G123_M16_sorted.bam 21311270 0 Assigned 84066 21311270 0.00394467 Unassigned_Ambiguity 0 21311270 0 Unassigned_MultiMapping 0 21311270 0 Unassigned_NoFeatures 21520133 21311270 1.0098 Unassigned_Unmapped 0 21311270 0 Unassigned_MappingQuality 0 21311270 0 Unassigned_FragmentLength 0 21311270 0 Unassigned_Chimera 0 21311270 0 Unassigned_Secondary 0 21311270 0 Unassigned_Nonjunction 0 21311270 0 Unassigned_Duplicate 0 21311270 0 G123_M16_assign_only1_feature: Status G123_M16_sorted.bam 21311270 0 Assigned 13612744 21311270 0.638758 Unassigned_Ambiguity 93314 21311270 0.00437862 Unassigned_MultiMapping 0 21311270 0 Unassigned_NoFeatures 7898141 21311270 0.370609 Unassigned_Unmapped 0 21311270 0 Unassigned_MappingQuality 0 21311270 0 Unassigned_FragmentLength 0 21311270 0 Unassigned_Chimera 0 21311270 0 Unassigned_Secondary 0 21311270 0 Unassigned_Nonjunction 0 21311270 0 Unassigned_Duplicate 0 21311270 0