----------------------- Need shift 5 command (have more than 9 arguments): ----------------------- ----------------------- Start of variable list: ----------------------- SCRIPT_DIR: /restricted/projectnb/waxmanlab/kkarri/G123_New_Env_PCA/Scripts/09a_DiffExp_2_HTSeq Dataset_DIR: /restricted/projectnb/waxmanlab/kkarri/G123_New Dataset_Label: G123 GTF_Files_DIR: /unprotected/projects/waxmanlab/routines/GTF_Files ANNOTATION_FILE: RefSeq_GeneBody.gtf CONDITION_1_NAME: Male_27h_Vehicle_G123_M5M6 CONDITION_2_NAME: Male_27h_TCPOBOP_G123_M7M8 Lengths_DIR: /unprotected/projects/waxmanlab/routines/GTF_Files/lengths GENE_LENGTHS_FILE: Exon_Regions_Lengths.txt COUNT_DIR: RefSeq_Exon_GTF OUTPUT_PREFIX: DiffExp_v2_GeneBody DiffExp_Index: DiffExp_2a COL_SUFFIX: GeneBody COUNT_PROGRAM: HTSeq ----------------------- End of variable list ----------------------- ========================================================== Starting on : Wed Feb 27 16:28:58 EST 2019 Running on node : scc-ka1 Current directory : /restricted/projectnb/waxmanlab/kkarri/G123_New_Env_PCA/Scripts/09a_DiffExp_2_HTSeq Current job ID : 3234765 Current job name : Step_09a_DiffExp_2a Task index number : undefined Parameter for multiple cores : 1 ========================================================== Change dir to scratch directory Print scratch directory location: /scratch/3234765.1.linga Loading required modules... ------------------------------------------ Sample_DIR: G123_M5 Sample_ID: G123_M5 Description: Male_27h_Vehicle_1 M_Num: M5 Copy Condition_1 sample count files to Condition_1 folder calculate mapped reads: G123_M5 Sample_DIR: G123_M6 Sample_ID: G123_M6 Description: Male_27h_Vehicle_2 M_Num: M6 Copy Condition_1 sample count files to Condition_1 folder calculate mapped reads: G123_M6 M_Num_Cond1_List: M5M6 ------------------------------------------ ------------------------------------------ Sample_DIR: G123_M7 Sample_ID: G123_M7 Description: Male_27h_TCPOBOP_1 M_Num: M7 Copy Condition_2 sample count files to Condition_2 folder calculate mapped reads: G123_M7 Sample_DIR: G123_M8 Sample_ID: G123_M8 Description: Male_27h_TCPOBOP_2 M_Num: M8 Copy Condition_2 sample count files to Condition_2 folder calculate mapped reads: G123_M8 M_Num_Cond2_List: M7M8 ------------------------------------------ ========================================================== Number of replicates in each condition: NUM_REP_CONDITION1: 2 NUM_REP_CONDITION1: 2 ========================================================== Renaming input count files Counting program: HTSeq Removing last 5 lines (remove special counters) Counting program: HTSeq Removing last 5 lines (remove special counters) Counting program: HTSeq Removing last 5 lines (remove special counters) Counting program: HTSeq Removing last 5 lines (remove special counters) number of mapped reads 34313514 32110871 29383190 40788463 ========================================================== List files in Input -rw-r--r-- 1 kkarri waxmanlab 291522 Feb 27 16:28 /scratch/3234765.1.linga/Input/Exon_Regions_Lengths.txt -rw-r--r-- 1 kkarri waxmanlab 250269 Feb 27 16:28 /scratch/3234765.1.linga/Input/Male_27h_TCPOBOP_G123_M7M80.out -rw-r--r-- 1 kkarri waxmanlab 9 Feb 27 16:28 /scratch/3234765.1.linga/Input/Male_27h_TCPOBOP_G123_M7M80_num_mapped_reads.txt -rw-r--r-- 1 kkarri waxmanlab 249842 Feb 27 16:28 /scratch/3234765.1.linga/Input/Male_27h_TCPOBOP_G123_M7M81.out -rw-r--r-- 1 kkarri waxmanlab 9 Feb 27 16:28 /scratch/3234765.1.linga/Input/Male_27h_TCPOBOP_G123_M7M81_num_mapped_reads.txt -rw-r--r-- 1 kkarri waxmanlab 249269 Feb 27 16:28 /scratch/3234765.1.linga/Input/Male_27h_Vehicle_G123_M5M60.out -rw-r--r-- 1 kkarri waxmanlab 9 Feb 27 16:28 /scratch/3234765.1.linga/Input/Male_27h_Vehicle_G123_M5M60_num_mapped_reads.txt -rw-r--r-- 1 kkarri waxmanlab 251588 Feb 27 16:28 /scratch/3234765.1.linga/Input/Male_27h_Vehicle_G123_M5M61.out -rw-r--r-- 1 kkarri waxmanlab 9 Feb 27 16:28 /scratch/3234765.1.linga/Input/Male_27h_Vehicle_G123_M5M61_num_mapped_reads.txt /scratch/3234765.1.linga/Input/Male_27h_TCPOBOP_G123_M7M8: total 8 drwxr-xr-x 2 kkarri waxmanlab 4096 Feb 27 16:28 . drwxr-xr-x 4 kkarri waxmanlab 4096 Feb 27 16:28 .. /scratch/3234765.1.linga/Input/Male_27h_Vehicle_G123_M5M6: total 8 drwxr-xr-x 2 kkarri waxmanlab 4096 Feb 27 16:28 . drwxr-xr-x 4 kkarri waxmanlab 4096 Feb 27 16:28 .. ========================================================== Starting to run my commands Printing Rscript command: Rscript differentialAnalysis.R Male_27h_Vehicle_G123_M5M6 Male_27h_TCPOBOP_G123_M7M8 2 2 RefSeq_GeneBody.gtf /scratch/3234765.1.linga/Input DiffExp_v2_GeneBody Exon_Regions_Lengths.txt [1] "Arguments for differentialAnalysisDESeq.R:" [1] "Male_27h_Vehicle_G123_M5M6" [1] "Male_27h_TCPOBOP_G123_M7M8" [1] 2 [1] 2 [1] "RefSeq_GeneBody.gtf" [1] "/scratch/3234765.1.linga/Input" [1] "DiffExp_v2_GeneBody" [1] "Exon_Regions_Lengths.txt" [1] "sum1:122478.696534664" "sum1:121135.551577775" "sum1:121807.12405622" [1] "sum2:113680.530412666" "sum2:116007.990555832" "sum2:114844.260484249" load GTF file ... parse attributes ... [1] "output file is in: /scratch/3234765.1.linga/Input/DiffExp_v2_GeneBody_Male_27h_Vehicle_G123_M5M6_Male_27h_TCPOBOP_G123_M7M8.txt" ========================================================== Create SEGEX formatted file: Printing Rscript command: Rscript formatForSegex_ver3.R DiffExp_v2_GeneBody_Male_27h_Vehicle_G123_M5M6_Male_27h_TCPOBOP_G123_M7M8.txt Male_27h_TCPOBOP_G123_M7M8_G123_M7M8_vs_Male_27h_Vehicle_G123_M5M6_G123_M5M6_DiffExp_v2_GeneBody_forSEGEXUpload 1 GeneBody Create SEGEX formatted file: Printing Rscript command: Rscript formatForSegex_ver4.R DiffExp_v2_GeneBody_Male_27h_Vehicle_G123_M5M6_Male_27h_TCPOBOP_G123_M7M8.txt Male_27h_TCPOBOP_G123_M7M8_G123_M7M8_vs_Male_27h_Vehicle_G123_M5M6_G123_M5M6_DiffExp_v2_GeneBody_forSEGEXUpload 1 GeneBody ========================================================== Comparison_Info: Male_27h_TCPOBOP_G123_M7M8_G123_M7M8_Male_27h_Vehicle_G123_M5M6_G123_M5M6 #---------------------------------------------------------------------------------- Running Diff_Genes.R #---------------------------------------------------------------------------------- Printing Rscript command: Rscript Diff_Genes.R Male_27h_TCPOBOP_G123_M7M8_G123_M7M8_vs_Male_27h_Vehicle_G123_M5M6_G123_M5M6_DiffExp_v2_GeneBody_forSEGEXUpload_DESeq.txt 2 0.05 DESeq GeneBody'_'Male_27h_TCPOBOP_G123_M7M8_G123_M7M8_Male_27h_Vehicle_G123_M5M6_G123_M5M6 [1] "Print arguments:" [1] "-----------------" [1] "Differential expression_Output:" [1] "Male_27h_TCPOBOP_G123_M7M8_G123_M7M8_vs_Male_27h_Vehicle_G123_M5M6_G123_M5M6_DiffExp_v2_GeneBody_forSEGEXUpload_DESeq.txt" [1] "fold_change_cutoff:" [1] "2" [1] "padj_cutoff:" [1] "0.05" [1] "postfix:" [1] "DESeq" [1] "count_method:" [1] "GeneBody_Male_27h_TCPOBOP_G123_M7M8_G123_M7M8_Male_27h_Vehicle_G123_M5M6_G123_M5M6" [1] "-----------------" [1] "Differential Gene Counts" [1] "Number of significant differential genes with positive fold change (Up Genes):" [1] 349 7 [1] "Number of significant differential genes with negative fold change (Down Genes):" [1] 106 7 [1] "Check out Up_Genes_DESeq_GeneBody_Male_27h_TCPOBOP_G123_M7M8_G123_M7M8_Male_27h_Vehicle_G123_M5M6_G123_M5M6.txt!" [1] "Check out Down_Genes_DESeq_GeneBody_Male_27h_TCPOBOP_G123_M7M8_G123_M7M8_Male_27h_Vehicle_G123_M5M6_G123_M5M6.txt!" Rscript Diff_Genes.R Male_27h_TCPOBOP_G123_M7M8_G123_M7M8_vs_Male_27h_Vehicle_G123_M5M6_G123_M5M6_DiffExp_v2_GeneBody_forSEGEXUpload_EdgeR.txt 2 0.05 EdgeR GeneBody'_'Male_27h_TCPOBOP_G123_M7M8_G123_M7M8_Male_27h_Vehicle_G123_M5M6_G123_M5M6 [1] "Print arguments:" [1] "-----------------" [1] "Differential expression_Output:" [1] "Male_27h_TCPOBOP_G123_M7M8_G123_M7M8_vs_Male_27h_Vehicle_G123_M5M6_G123_M5M6_DiffExp_v2_GeneBody_forSEGEXUpload_EdgeR.txt" [1] "fold_change_cutoff:" [1] "2" [1] "padj_cutoff:" [1] "0.05" [1] "postfix:" [1] "EdgeR" [1] "count_method:" [1] "GeneBody_Male_27h_TCPOBOP_G123_M7M8_G123_M7M8_Male_27h_Vehicle_G123_M5M6_G123_M5M6" [1] "-----------------" [1] "Differential Gene Counts" [1] "Number of significant differential genes with positive fold change (Up Genes):" [1] 474 7 [1] "Number of significant differential genes with negative fold change (Down Genes):" [1] 170 7 [1] "Check out Up_Genes_EdgeR_GeneBody_Male_27h_TCPOBOP_G123_M7M8_G123_M7M8_Male_27h_Vehicle_G123_M5M6_G123_M5M6.txt!" [1] "Check out Down_Genes_EdgeR_GeneBody_Male_27h_TCPOBOP_G123_M7M8_G123_M7M8_Male_27h_Vehicle_G123_M5M6_G123_M5M6.txt!" #---------------------------------------------------------------------------------- Running Venn_Diff_Genes.R #---------------------------------------------------------------------------------- Printing Rscript command: #---------------------------------------------------------------------------------- Rscript Venn_Diff_Genes.R Down_Genes_DESeq_GeneBody_Male_27h_TCPOBOP_G123_M7M8_G123_M7M8_Male_27h_Vehicle_G123_M5M6_G123_M5M6.txt Down_Genes_EdgeR_GeneBody_Male_27h_TCPOBOP_G123_M7M8_G123_M7M8_Male_27h_Vehicle_G123_M5M6_G123_M5M6.txt GeneBody_Counting DiffExp_2a [1] "Print arguments:" [1] "-----------------" [1] "File1:" [1] "Down_Genes_DESeq_GeneBody_Male_27h_TCPOBOP_G123_M7M8_G123_M7M8_Male_27h_Vehicle_G123_M5M6_G123_M5M6.txt" [1] "File2:" [1] "Down_Genes_EdgeR_GeneBody_Male_27h_TCPOBOP_G123_M7M8_G123_M7M8_Male_27h_Vehicle_G123_M5M6_G123_M5M6.txt" [1] "Subtitle:" [1] "GeneBody_Counting" [1] "DiffExp_Index:" [1] "DiffExp_2a" [1] "-----------------" [1] "Down.DESeq.GeneBody.HTSeq" [1] "Down.EdgeR.GeneBody.HTSeq" null device 1 [1] "Removing VennDiagram*.log files" [1] "Check out Venn diagram and Count.Table!" #---------------------------------------------------------------------------------- Rscript Venn_Diff_Genes.R Up_Genes_DESeq_GeneBody_Male_27h_TCPOBOP_G123_M7M8_G123_M7M8_Male_27h_Vehicle_G123_M5M6_G123_M5M6.txt Up_Genes_EdgeR_GeneBody_Male_27h_TCPOBOP_G123_M7M8_G123_M7M8_Male_27h_Vehicle_G123_M5M6_G123_M5M6.txt GeneBody_Counting DiffExp_2a [1] "Print arguments:" [1] "-----------------" [1] "File1:" [1] "Up_Genes_DESeq_GeneBody_Male_27h_TCPOBOP_G123_M7M8_G123_M7M8_Male_27h_Vehicle_G123_M5M6_G123_M5M6.txt" [1] "File2:" [1] "Up_Genes_EdgeR_GeneBody_Male_27h_TCPOBOP_G123_M7M8_G123_M7M8_Male_27h_Vehicle_G123_M5M6_G123_M5M6.txt" [1] "Subtitle:" [1] "GeneBody_Counting" [1] "DiffExp_Index:" [1] "DiffExp_2a" [1] "-----------------" [1] "Up.DESeq.GeneBody.HTSeq" [1] "Up.EdgeR.GeneBody.HTSeq" null device 1 [1] "Removing VennDiagram*.log files" [1] "Check out Venn diagram and Count.Table!" #---------------------------------------------------------------------------------- #---------------------------------------------------------------------------------- Merging Count.Table(s) into one text file #---------------------------------------------------------------------------------- ========================================================== Renaming the Differential_Expression_File ========================================================== List files in Input -rw-r--r-- 1 kkarri waxmanlab 295 Feb 27 16:30 /scratch/3234765.1.linga/Input/DiffExp_2a_Venn_Tables_Male_27h_TCPOBOP_G123_M7M8_G123_M7M8_Male_27h_Vehicle_G123_M5M6_G123_M5M6.txt -rw-r--r-- 1 kkarri waxmanlab 9575178 Feb 27 16:30 /scratch/3234765.1.linga/Input/DiffExp_v2_GeneBody_Male_27h_Vehicle_G123_M5M6_Male_27h_TCPOBOP_G123_M7M8.txt -rwxr-xr-x 1 kkarri waxmanlab 7394 Feb 27 16:28 /scratch/3234765.1.linga/Input/Diff_Genes.R -rw-r--r-- 1 kkarri waxmanlab 14997 Feb 27 16:30 /scratch/3234765.1.linga/Input/Down_Genes_DESeq_GeneBody_Male_27h_TCPOBOP_G123_M7M8_G123_M7M8_Male_27h_Vehicle_G123_M5M6_G123_M5M6.txt -rw-r--r-- 1 kkarri waxmanlab 22601 Feb 27 16:30 /scratch/3234765.1.linga/Input/Down_Genes_EdgeR_GeneBody_Male_27h_TCPOBOP_G123_M7M8_G123_M7M8_Male_27h_Vehicle_G123_M5M6_G123_M5M6.txt -rw-r--r-- 1 kkarri waxmanlab 291522 Feb 27 16:28 /scratch/3234765.1.linga/Input/Exon_Regions_Lengths.txt -rw-r--r-- 1 kkarri waxmanlab 250269 Feb 27 16:28 /scratch/3234765.1.linga/Input/Male_27h_TCPOBOP_G123_M7M80.out -rw-r--r-- 1 kkarri waxmanlab 9 Feb 27 16:28 /scratch/3234765.1.linga/Input/Male_27h_TCPOBOP_G123_M7M80_num_mapped_reads.txt -rw-r--r-- 1 kkarri waxmanlab 249842 Feb 27 16:28 /scratch/3234765.1.linga/Input/Male_27h_TCPOBOP_G123_M7M81.out -rw-r--r-- 1 kkarri waxmanlab 9 Feb 27 16:28 /scratch/3234765.1.linga/Input/Male_27h_TCPOBOP_G123_M7M81_num_mapped_reads.txt -rw-r--r-- 1 kkarri waxmanlab 2329999 Feb 27 16:30 /scratch/3234765.1.linga/Input/Male_27h_TCPOBOP_G123_M7M8_G123_M7M8_vs_Male_27h_Vehicle_G123_M5M6_G123_M5M6_DiffExp_v2_GeneBody_forSEGEXUpload_DESeq.txt -rw-r--r-- 1 kkarri waxmanlab 2354196 Feb 27 16:30 /scratch/3234765.1.linga/Input/Male_27h_TCPOBOP_G123_M7M8_G123_M7M8_vs_Male_27h_Vehicle_G123_M5M6_G123_M5M6_DiffExp_v2_GeneBody_forSEGEXUpload_EdgeR.txt -rw-r--r-- 1 kkarri waxmanlab 2329997 Feb 27 16:30 /scratch/3234765.1.linga/Input/Male_27h_TCPOBOP_G123_M7M8_G123_M7M8_vs_Male_27h_Vehicle_G123_M5M6_G123_M5M6_DiffExp_v2_GeneBody_forSEGEXUpload_TPM_DESeq.txt -rw-r--r-- 1 kkarri waxmanlab 2354194 Feb 27 16:30 /scratch/3234765.1.linga/Input/Male_27h_TCPOBOP_G123_M7M8_G123_M7M8_vs_Male_27h_Vehicle_G123_M5M6_G123_M5M6_DiffExp_v2_GeneBody_forSEGEXUpload_TPM_EdgeR.txt -rw-r--r-- 1 kkarri waxmanlab 249269 Feb 27 16:28 /scratch/3234765.1.linga/Input/Male_27h_Vehicle_G123_M5M60.out -rw-r--r-- 1 kkarri waxmanlab 9 Feb 27 16:28 /scratch/3234765.1.linga/Input/Male_27h_Vehicle_G123_M5M60_num_mapped_reads.txt -rw-r--r-- 1 kkarri waxmanlab 251588 Feb 27 16:28 /scratch/3234765.1.linga/Input/Male_27h_Vehicle_G123_M5M61.out -rw-r--r-- 1 kkarri waxmanlab 9 Feb 27 16:28 /scratch/3234765.1.linga/Input/Male_27h_Vehicle_G123_M5M61_num_mapped_reads.txt -rw-r--r-- 1 kkarri waxmanlab 24875 Feb 27 16:30 /scratch/3234765.1.linga/Input/Up_Genes_DESeq_GeneBody_Male_27h_TCPOBOP_G123_M7M8_G123_M7M8_Male_27h_Vehicle_G123_M5M6_G123_M5M6.txt -rw-r--r-- 1 kkarri waxmanlab 34255 Feb 27 16:30 /scratch/3234765.1.linga/Input/Up_Genes_EdgeR_GeneBody_Male_27h_TCPOBOP_G123_M7M8_G123_M7M8_Male_27h_Vehicle_G123_M5M6_G123_M5M6.txt -rwxr-xr-x 1 kkarri waxmanlab 9553 Feb 27 16:28 /scratch/3234765.1.linga/Input/Venn_Diff_Genes.R -rw-r--r-- 1 kkarri waxmanlab 40411 Feb 27 16:30 /scratch/3234765.1.linga/Input/Venn_Down.DESeq.GeneBody.HTSeq.Down.EdgeR.GeneBody.HTSeq.png -rw-r--r-- 1 kkarri waxmanlab 40036 Feb 27 16:30 /scratch/3234765.1.linga/Input/Venn_Up.DESeq.GeneBody.HTSeq.Up.EdgeR.GeneBody.HTSeq.png -rwxr-xr-x 1 kkarri waxmanlab 3925 Feb 27 16:28 /scratch/3234765.1.linga/Input/formatForSegex_ver3.R -rwxr-xr-x 1 kkarri waxmanlab 3929 Feb 27 16:28 /scratch/3234765.1.linga/Input/formatForSegex_ver4.R /scratch/3234765.1.linga/Input/Male_27h_TCPOBOP_G123_M7M8: total 8 drwxr-xr-x 2 kkarri waxmanlab 4096 Feb 27 16:28 . drwxr-xr-x 4 kkarri waxmanlab 4096 Feb 27 16:30 .. /scratch/3234765.1.linga/Input/Male_27h_Vehicle_G123_M5M6: total 8 drwxr-xr-x 2 kkarri waxmanlab 4096 Feb 27 16:28 . drwxr-xr-x 4 kkarri waxmanlab 4096 Feb 27 16:30 .. ========================================================== List files in scratch total 72M drwx------ 3 kkarri waxmanlab 4.0K Feb 27 16:30 . drwxrwxrwt. 26 root root 124K Feb 27 16:28 .. -rw-r--r-- 1 kkarri waxmanlab 103 Feb 27 16:28 Condition_1.txt -rw-r--r-- 1 kkarri waxmanlab 103 Feb 27 16:28 Condition_2.txt drwxr-xr-x 4 kkarri waxmanlab 4.0K Feb 27 16:30 Input -rw-r--r-- 1 kkarri waxmanlab 72M Feb 27 16:28 RefSeq_GeneBody.gtf -rwxr-xr-x 1 kkarri waxmanlab 17K Feb 27 16:28 differentialAnalysis.R ========================================================== Re-naming files in OUTPUT_DIR Need to append the COUNT_PROGRAM name to all output files List files in OUTPUT_DIR total 18M drwxr-sr-x 2 kkarri waxmanlab 32K Feb 27 16:30 . drwxr-sr-x 6 kkarri waxmanlab 32K Feb 27 16:28 .. -rw-r--r-- 1 kkarri waxmanlab 295 Feb 27 16:30 DiffExp_2a_Venn_Tables_Male_27h_TCPOBOP_G123_M7M8_G123_M7M8_Male_27h_Vehicle_G123_M5M6_G123_M5M6_HTSeq.txt -rw-r--r-- 1 kkarri waxmanlab 9.2M Feb 27 16:30 DiffExp_v2_GeneBody_Male_27h_Vehicle_G123_M5M6_Male_27h_TCPOBOP_G123_M7M8_HTSeq.txt -rw-r--r-- 1 kkarri waxmanlab 15K Feb 27 16:30 Down_Genes_DESeq_GeneBody_Male_27h_TCPOBOP_G123_M7M8_G123_M7M8_Male_27h_Vehicle_G123_M5M6_G123_M5M6_HTSeq.txt -rw-r--r-- 1 kkarri waxmanlab 23K Feb 27 16:30 Down_Genes_EdgeR_GeneBody_Male_27h_TCPOBOP_G123_M7M8_G123_M7M8_Male_27h_Vehicle_G123_M5M6_G123_M5M6_HTSeq.txt -rw-r--r-- 1 kkarri waxmanlab 2.3M Feb 27 16:30 Male_27h_TCPOBOP_G123_M7M8_G123_M7M8_vs_Male_27h_Vehicle_G123_M5M6_G123_M5M6_DiffExp_v2_GeneBody_forSEGEXUpload_DESeq_HTSeq.txt -rw-r--r-- 1 kkarri waxmanlab 2.3M Feb 27 16:30 Male_27h_TCPOBOP_G123_M7M8_G123_M7M8_vs_Male_27h_Vehicle_G123_M5M6_G123_M5M6_DiffExp_v2_GeneBody_forSEGEXUpload_EdgeR_HTSeq.txt -rw-r--r-- 1 kkarri waxmanlab 2.3M Feb 27 16:30 Male_27h_TCPOBOP_G123_M7M8_G123_M7M8_vs_Male_27h_Vehicle_G123_M5M6_G123_M5M6_DiffExp_v2_GeneBody_forSEGEXUpload_TPM_DESeq_HTSeq.txt -rw-r--r-- 1 kkarri waxmanlab 2.3M Feb 27 16:30 Male_27h_TCPOBOP_G123_M7M8_G123_M7M8_vs_Male_27h_Vehicle_G123_M5M6_G123_M5M6_DiffExp_v2_GeneBody_forSEGEXUpload_TPM_EdgeR_HTSeq.txt -rw-r--r-- 1 kkarri waxmanlab 25K Feb 27 16:30 Up_Genes_DESeq_GeneBody_Male_27h_TCPOBOP_G123_M7M8_G123_M7M8_Male_27h_Vehicle_G123_M5M6_G123_M5M6_HTSeq.txt -rw-r--r-- 1 kkarri waxmanlab 34K Feb 27 16:30 Up_Genes_EdgeR_GeneBody_Male_27h_TCPOBOP_G123_M7M8_G123_M7M8_Male_27h_Vehicle_G123_M5M6_G123_M5M6_HTSeq.txt -rw-r--r-- 1 kkarri waxmanlab 40K Feb 27 16:30 Venn_Down.DESeq.GeneBody.HTSeq.Down.EdgeR.GeneBody.HTSeq_HTSeq.png -rw-r--r-- 1 kkarri waxmanlab 40K Feb 27 16:30 Venn_Up.DESeq.GeneBody.HTSeq.Up.EdgeR.GeneBody.HTSeq_HTSeq.png ========================================================== ========================================================== Finished on : Wed Feb 27 16:30:29 EST 2019 1 minutes and 31 seconds elapsed. ==========================================================