----------------------- Need shift 5 command (have more than 9 arguments): ----------------------- ----------------------- Start of variable list: ----------------------- SCRIPT_DIR: /restricted/projectnb/waxmanlab/kkarri/G123_New_Env_PCA/Scripts/09a_DiffExp_3_HTSeq Dataset_DIR: /restricted/projectnb/waxmanlab/kkarri/G123_New Dataset_Label: G123 GTF_Files_DIR: /unprotected/projects/waxmanlab/routines/GTF_Files ANNOTATION_FILE: RefSeq_GeneBody.gtf CONDITION_1_NAME: Female_3h_Vehicle_G123_M9M10 CONDITION_2_NAME: Female_3h_TCPOBOP_G123_M11M12 Lengths_DIR: /unprotected/projects/waxmanlab/routines/GTF_Files/lengths GENE_LENGTHS_FILE: Exon_Regions_Lengths.txt COUNT_DIR: RefSeq_Exon_GTF OUTPUT_PREFIX: DiffExp_v2_GeneBody DiffExp_Index: DiffExp_3a COL_SUFFIX: GeneBody COUNT_PROGRAM: HTSeq ----------------------- End of variable list ----------------------- ========================================================== Starting on : Wed Feb 27 16:28:59 EST 2019 Running on node : scc-tl3 Current directory : /restricted/projectnb/waxmanlab/kkarri/G123_New_Env_PCA/Scripts/09a_DiffExp_3_HTSeq Current job ID : 3234813 Current job name : Step_09a_DiffExp_3a Task index number : undefined Parameter for multiple cores : 1 ========================================================== Change dir to scratch directory Print scratch directory location: /scratch/3234813.1.linga Loading required modules... ------------------------------------------ Sample_DIR: G123_M9 Sample_ID: G123_M9 Description: Female_3h_Vehicle_1 M_Num: M9 Copy Condition_1 sample count files to Condition_1 folder calculate mapped reads: G123_M9 Sample_DIR: G123_M10 Sample_ID: G123_M10 Description: Female_3h_Vehicle_2 M_Num: M10 Copy Condition_1 sample count files to Condition_1 folder calculate mapped reads: G123_M10 M_Num_Cond1_List: M9M10 ------------------------------------------ ------------------------------------------ Sample_DIR: G123_M11 Sample_ID: G123_M11 Description: Female_3h_TCPOBOP_1 M_Num: M11 Copy Condition_2 sample count files to Condition_2 folder calculate mapped reads: G123_M11 Sample_DIR: G123_M12 Sample_ID: G123_M12 Description: Female_3h_TCPOBOP_2 M_Num: M12 Copy Condition_2 sample count files to Condition_2 folder calculate mapped reads: G123_M12 M_Num_Cond2_List: M11M12 ------------------------------------------ ========================================================== Number of replicates in each condition: NUM_REP_CONDITION1: 2 NUM_REP_CONDITION1: 2 ========================================================== Renaming input count files Counting program: HTSeq Removing last 5 lines (remove special counters) Counting program: HTSeq Removing last 5 lines (remove special counters) Counting program: HTSeq Removing last 5 lines (remove special counters) Counting program: HTSeq Removing last 5 lines (remove special counters) number of mapped reads 25403837 33681901 31418117 31996155 ========================================================== List files in Input -rw-r--r-- 1 kkarri waxmanlab 291522 Feb 27 16:29 /scratch/3234813.1.linga/Input/Exon_Regions_Lengths.txt -rw-r--r-- 1 kkarri waxmanlab 247625 Feb 27 16:29 /scratch/3234813.1.linga/Input/Female_3h_TCPOBOP_G123_M11M120.out -rw-r--r-- 1 kkarri waxmanlab 9 Feb 27 16:28 /scratch/3234813.1.linga/Input/Female_3h_TCPOBOP_G123_M11M120_num_mapped_reads.txt -rw-r--r-- 1 kkarri waxmanlab 249365 Feb 27 16:29 /scratch/3234813.1.linga/Input/Female_3h_TCPOBOP_G123_M11M121.out -rw-r--r-- 1 kkarri waxmanlab 9 Feb 27 16:29 /scratch/3234813.1.linga/Input/Female_3h_TCPOBOP_G123_M11M121_num_mapped_reads.txt -rw-r--r-- 1 kkarri waxmanlab 249143 Feb 27 16:29 /scratch/3234813.1.linga/Input/Female_3h_Vehicle_G123_M9M100.out -rw-r--r-- 1 kkarri waxmanlab 9 Feb 27 16:28 /scratch/3234813.1.linga/Input/Female_3h_Vehicle_G123_M9M100_num_mapped_reads.txt -rw-r--r-- 1 kkarri waxmanlab 249177 Feb 27 16:29 /scratch/3234813.1.linga/Input/Female_3h_Vehicle_G123_M9M101.out -rw-r--r-- 1 kkarri waxmanlab 9 Feb 27 16:28 /scratch/3234813.1.linga/Input/Female_3h_Vehicle_G123_M9M101_num_mapped_reads.txt /scratch/3234813.1.linga/Input/Female_3h_TCPOBOP_G123_M11M12: total 8 drwxr-xr-x 2 kkarri waxmanlab 4096 Feb 27 16:29 . drwxr-xr-x 4 kkarri waxmanlab 4096 Feb 27 16:29 .. /scratch/3234813.1.linga/Input/Female_3h_Vehicle_G123_M9M10: total 8 drwxr-xr-x 2 kkarri waxmanlab 4096 Feb 27 16:29 . drwxr-xr-x 4 kkarri waxmanlab 4096 Feb 27 16:29 .. ========================================================== Starting to run my commands Printing Rscript command: Rscript differentialAnalysis.R Female_3h_Vehicle_G123_M9M10 Female_3h_TCPOBOP_G123_M11M12 2 2 RefSeq_GeneBody.gtf /scratch/3234813.1.linga/Input DiffExp_v2_GeneBody Exon_Regions_Lengths.txt [1] "Arguments for differentialAnalysisDESeq.R:" [1] "Female_3h_Vehicle_G123_M9M10" [1] "Female_3h_TCPOBOP_G123_M11M12" [1] 2 [1] 2 [1] "RefSeq_GeneBody.gtf" [1] "/scratch/3234813.1.linga/Input" [1] "DiffExp_v2_GeneBody" [1] "Exon_Regions_Lengths.txt" [1] "sum1:122672.58965524" "sum1:126075.037841152" "sum1:124373.813748196" [1] "sum2:122823.479291738" "sum2:120834.504456424" "sum2:121828.991874081" load GTF file ... parse attributes ... [1] "output file is in: /scratch/3234813.1.linga/Input/DiffExp_v2_GeneBody_Female_3h_Vehicle_G123_M9M10_Female_3h_TCPOBOP_G123_M11M12.txt" ========================================================== Create SEGEX formatted file: Printing Rscript command: Rscript formatForSegex_ver3.R DiffExp_v2_GeneBody_Female_3h_Vehicle_G123_M9M10_Female_3h_TCPOBOP_G123_M11M12.txt Female_3h_TCPOBOP_G123_M11M12_G123_M11M12_vs_Female_3h_Vehicle_G123_M9M10_G123_M9M10_DiffExp_v2_GeneBody_forSEGEXUpload 1 GeneBody Create SEGEX formatted file: Printing Rscript command: Rscript formatForSegex_ver4.R DiffExp_v2_GeneBody_Female_3h_Vehicle_G123_M9M10_Female_3h_TCPOBOP_G123_M11M12.txt Female_3h_TCPOBOP_G123_M11M12_G123_M11M12_vs_Female_3h_Vehicle_G123_M9M10_G123_M9M10_DiffExp_v2_GeneBody_forSEGEXUpload 1 GeneBody ========================================================== Comparison_Info: Female_3h_TCPOBOP_G123_M11M12_G123_M11M12_Female_3h_Vehicle_G123_M9M10_G123_M9M10 #---------------------------------------------------------------------------------- Running Diff_Genes.R #---------------------------------------------------------------------------------- Printing Rscript command: Rscript Diff_Genes.R Female_3h_TCPOBOP_G123_M11M12_G123_M11M12_vs_Female_3h_Vehicle_G123_M9M10_G123_M9M10_DiffExp_v2_GeneBody_forSEGEXUpload_DESeq.txt 2 0.05 DESeq GeneBody'_'Female_3h_TCPOBOP_G123_M11M12_G123_M11M12_Female_3h_Vehicle_G123_M9M10_G123_M9M10 [1] "Print arguments:" [1] "-----------------" [1] "Differential expression_Output:" [1] "Female_3h_TCPOBOP_G123_M11M12_G123_M11M12_vs_Female_3h_Vehicle_G123_M9M10_G123_M9M10_DiffExp_v2_GeneBody_forSEGEXUpload_DESeq.txt" [1] "fold_change_cutoff:" [1] "2" [1] "padj_cutoff:" [1] "0.05" [1] "postfix:" [1] "DESeq" [1] "count_method:" [1] "GeneBody_Female_3h_TCPOBOP_G123_M11M12_G123_M11M12_Female_3h_Vehicle_G123_M9M10_G123_M9M10" [1] "-----------------" [1] "Differential Gene Counts" [1] "Number of significant differential genes with positive fold change (Up Genes):" [1] 115 7 [1] "Number of significant differential genes with negative fold change (Down Genes):" [1] 25 7 [1] "Check out Up_Genes_DESeq_GeneBody_Female_3h_TCPOBOP_G123_M11M12_G123_M11M12_Female_3h_Vehicle_G123_M9M10_G123_M9M10.txt!" [1] "Check out Down_Genes_DESeq_GeneBody_Female_3h_TCPOBOP_G123_M11M12_G123_M11M12_Female_3h_Vehicle_G123_M9M10_G123_M9M10.txt!" Rscript Diff_Genes.R Female_3h_TCPOBOP_G123_M11M12_G123_M11M12_vs_Female_3h_Vehicle_G123_M9M10_G123_M9M10_DiffExp_v2_GeneBody_forSEGEXUpload_EdgeR.txt 2 0.05 EdgeR GeneBody'_'Female_3h_TCPOBOP_G123_M11M12_G123_M11M12_Female_3h_Vehicle_G123_M9M10_G123_M9M10 [1] "Print arguments:" [1] "-----------------" [1] "Differential expression_Output:" [1] "Female_3h_TCPOBOP_G123_M11M12_G123_M11M12_vs_Female_3h_Vehicle_G123_M9M10_G123_M9M10_DiffExp_v2_GeneBody_forSEGEXUpload_EdgeR.txt" [1] "fold_change_cutoff:" [1] "2" [1] "padj_cutoff:" [1] "0.05" [1] "postfix:" [1] "EdgeR" [1] "count_method:" [1] "GeneBody_Female_3h_TCPOBOP_G123_M11M12_G123_M11M12_Female_3h_Vehicle_G123_M9M10_G123_M9M10" [1] "-----------------" [1] "Differential Gene Counts" [1] "Number of significant differential genes with positive fold change (Up Genes):" [1] 162 7 [1] "Number of significant differential genes with negative fold change (Down Genes):" [1] 55 7 [1] "Check out Up_Genes_EdgeR_GeneBody_Female_3h_TCPOBOP_G123_M11M12_G123_M11M12_Female_3h_Vehicle_G123_M9M10_G123_M9M10.txt!" [1] "Check out Down_Genes_EdgeR_GeneBody_Female_3h_TCPOBOP_G123_M11M12_G123_M11M12_Female_3h_Vehicle_G123_M9M10_G123_M9M10.txt!" #---------------------------------------------------------------------------------- Running Venn_Diff_Genes.R #---------------------------------------------------------------------------------- Printing Rscript command: #---------------------------------------------------------------------------------- Rscript Venn_Diff_Genes.R Down_Genes_DESeq_GeneBody_Female_3h_TCPOBOP_G123_M11M12_G123_M11M12_Female_3h_Vehicle_G123_M9M10_G123_M9M10.txt Down_Genes_EdgeR_GeneBody_Female_3h_TCPOBOP_G123_M11M12_G123_M11M12_Female_3h_Vehicle_G123_M9M10_G123_M9M10.txt GeneBody_Counting DiffExp_3a [1] "Print arguments:" [1] "-----------------" [1] "File1:" [1] "Down_Genes_DESeq_GeneBody_Female_3h_TCPOBOP_G123_M11M12_G123_M11M12_Female_3h_Vehicle_G123_M9M10_G123_M9M10.txt" [1] "File2:" [1] "Down_Genes_EdgeR_GeneBody_Female_3h_TCPOBOP_G123_M11M12_G123_M11M12_Female_3h_Vehicle_G123_M9M10_G123_M9M10.txt" [1] "Subtitle:" [1] "GeneBody_Counting" [1] "DiffExp_Index:" [1] "DiffExp_3a" [1] "-----------------" [1] "Down.DESeq.GeneBody.HTSeq" [1] "Down.EdgeR.GeneBody.HTSeq" null device 1 [1] "Removing VennDiagram*.log files" [1] "Check out Venn diagram and Count.Table!" #---------------------------------------------------------------------------------- Rscript Venn_Diff_Genes.R Up_Genes_DESeq_GeneBody_Female_3h_TCPOBOP_G123_M11M12_G123_M11M12_Female_3h_Vehicle_G123_M9M10_G123_M9M10.txt Up_Genes_EdgeR_GeneBody_Female_3h_TCPOBOP_G123_M11M12_G123_M11M12_Female_3h_Vehicle_G123_M9M10_G123_M9M10.txt GeneBody_Counting DiffExp_3a [1] "Print arguments:" [1] "-----------------" [1] "File1:" [1] "Up_Genes_DESeq_GeneBody_Female_3h_TCPOBOP_G123_M11M12_G123_M11M12_Female_3h_Vehicle_G123_M9M10_G123_M9M10.txt" [1] "File2:" [1] "Up_Genes_EdgeR_GeneBody_Female_3h_TCPOBOP_G123_M11M12_G123_M11M12_Female_3h_Vehicle_G123_M9M10_G123_M9M10.txt" [1] "Subtitle:" [1] "GeneBody_Counting" [1] "DiffExp_Index:" [1] "DiffExp_3a" [1] "-----------------" [1] "Up.DESeq.GeneBody.HTSeq" [1] "Up.EdgeR.GeneBody.HTSeq" null device 1 [1] "Removing VennDiagram*.log files" [1] "Check out Venn diagram and Count.Table!" #---------------------------------------------------------------------------------- #---------------------------------------------------------------------------------- Merging Count.Table(s) into one text file #---------------------------------------------------------------------------------- ========================================================== Renaming the Differential_Expression_File ========================================================== List files in Input -rw-r--r-- 1 kkarri waxmanlab 292 Feb 27 16:29 /scratch/3234813.1.linga/Input/DiffExp_3a_Venn_Tables_Female_3h_TCPOBOP_G123_M11M12_G123_M11M12_Female_3h_Vehicle_G123_M9M10_G123_M9M10.txt -rw-r--r-- 1 kkarri waxmanlab 9023271 Feb 27 16:29 /scratch/3234813.1.linga/Input/DiffExp_v2_GeneBody_Female_3h_Vehicle_G123_M9M10_Female_3h_TCPOBOP_G123_M11M12.txt -rwxr-xr-x 1 kkarri waxmanlab 7394 Feb 27 16:28 /scratch/3234813.1.linga/Input/Diff_Genes.R -rw-r--r-- 1 kkarri waxmanlab 2548 Feb 27 16:29 /scratch/3234813.1.linga/Input/Down_Genes_DESeq_GeneBody_Female_3h_TCPOBOP_G123_M11M12_G123_M11M12_Female_3h_Vehicle_G123_M9M10_G123_M9M10.txt -rw-r--r-- 1 kkarri waxmanlab 5710 Feb 27 16:29 /scratch/3234813.1.linga/Input/Down_Genes_EdgeR_GeneBody_Female_3h_TCPOBOP_G123_M11M12_G123_M11M12_Female_3h_Vehicle_G123_M9M10_G123_M9M10.txt -rw-r--r-- 1 kkarri waxmanlab 291522 Feb 27 16:29 /scratch/3234813.1.linga/Input/Exon_Regions_Lengths.txt -rw-r--r-- 1 kkarri waxmanlab 247625 Feb 27 16:29 /scratch/3234813.1.linga/Input/Female_3h_TCPOBOP_G123_M11M120.out -rw-r--r-- 1 kkarri waxmanlab 9 Feb 27 16:28 /scratch/3234813.1.linga/Input/Female_3h_TCPOBOP_G123_M11M120_num_mapped_reads.txt -rw-r--r-- 1 kkarri waxmanlab 249365 Feb 27 16:29 /scratch/3234813.1.linga/Input/Female_3h_TCPOBOP_G123_M11M121.out -rw-r--r-- 1 kkarri waxmanlab 9 Feb 27 16:29 /scratch/3234813.1.linga/Input/Female_3h_TCPOBOP_G123_M11M121_num_mapped_reads.txt -rw-r--r-- 1 kkarri waxmanlab 2354201 Feb 27 16:29 /scratch/3234813.1.linga/Input/Female_3h_TCPOBOP_G123_M11M12_G123_M11M12_vs_Female_3h_Vehicle_G123_M9M10_G123_M9M10_DiffExp_v2_GeneBody_forSEGEXUpload_DESeq.txt -rw-r--r-- 1 kkarri waxmanlab 2330004 Feb 27 16:29 /scratch/3234813.1.linga/Input/Female_3h_TCPOBOP_G123_M11M12_G123_M11M12_vs_Female_3h_Vehicle_G123_M9M10_G123_M9M10_DiffExp_v2_GeneBody_forSEGEXUpload_EdgeR.txt -rw-r--r-- 1 kkarri waxmanlab 2354199 Feb 27 16:29 /scratch/3234813.1.linga/Input/Female_3h_TCPOBOP_G123_M11M12_G123_M11M12_vs_Female_3h_Vehicle_G123_M9M10_G123_M9M10_DiffExp_v2_GeneBody_forSEGEXUpload_TPM_DESeq.txt -rw-r--r-- 1 kkarri waxmanlab 2330002 Feb 27 16:29 /scratch/3234813.1.linga/Input/Female_3h_TCPOBOP_G123_M11M12_G123_M11M12_vs_Female_3h_Vehicle_G123_M9M10_G123_M9M10_DiffExp_v2_GeneBody_forSEGEXUpload_TPM_EdgeR.txt -rw-r--r-- 1 kkarri waxmanlab 249143 Feb 27 16:29 /scratch/3234813.1.linga/Input/Female_3h_Vehicle_G123_M9M100.out -rw-r--r-- 1 kkarri waxmanlab 9 Feb 27 16:28 /scratch/3234813.1.linga/Input/Female_3h_Vehicle_G123_M9M100_num_mapped_reads.txt -rw-r--r-- 1 kkarri waxmanlab 249177 Feb 27 16:29 /scratch/3234813.1.linga/Input/Female_3h_Vehicle_G123_M9M101.out -rw-r--r-- 1 kkarri waxmanlab 9 Feb 27 16:28 /scratch/3234813.1.linga/Input/Female_3h_Vehicle_G123_M9M101_num_mapped_reads.txt -rw-r--r-- 1 kkarri waxmanlab 8282 Feb 27 16:29 /scratch/3234813.1.linga/Input/Up_Genes_DESeq_GeneBody_Female_3h_TCPOBOP_G123_M11M12_G123_M11M12_Female_3h_Vehicle_G123_M9M10_G123_M9M10.txt -rw-r--r-- 1 kkarri waxmanlab 11560 Feb 27 16:29 /scratch/3234813.1.linga/Input/Up_Genes_EdgeR_GeneBody_Female_3h_TCPOBOP_G123_M11M12_G123_M11M12_Female_3h_Vehicle_G123_M9M10_G123_M9M10.txt -rwxr-xr-x 1 kkarri waxmanlab 9553 Feb 27 16:28 /scratch/3234813.1.linga/Input/Venn_Diff_Genes.R -rw-r--r-- 1 kkarri waxmanlab 39571 Feb 27 16:29 /scratch/3234813.1.linga/Input/Venn_Down.DESeq.GeneBody.HTSeq.Down.EdgeR.GeneBody.HTSeq.png -rw-r--r-- 1 kkarri waxmanlab 38375 Feb 27 16:29 /scratch/3234813.1.linga/Input/Venn_Up.DESeq.GeneBody.HTSeq.Up.EdgeR.GeneBody.HTSeq.png -rwxr-xr-x 1 kkarri waxmanlab 3925 Feb 27 16:28 /scratch/3234813.1.linga/Input/formatForSegex_ver3.R -rwxr-xr-x 1 kkarri waxmanlab 3929 Feb 27 16:28 /scratch/3234813.1.linga/Input/formatForSegex_ver4.R /scratch/3234813.1.linga/Input/Female_3h_TCPOBOP_G123_M11M12: total 8 drwxr-xr-x 2 kkarri waxmanlab 4096 Feb 27 16:29 . drwxr-xr-x 4 kkarri waxmanlab 4096 Feb 27 16:29 .. /scratch/3234813.1.linga/Input/Female_3h_Vehicle_G123_M9M10: total 8 drwxr-xr-x 2 kkarri waxmanlab 4096 Feb 27 16:29 . drwxr-xr-x 4 kkarri waxmanlab 4096 Feb 27 16:29 .. ========================================================== List files in scratch total 72M drwx------ 3 kkarri waxmanlab 4.0K Feb 27 16:29 . drwxrwxrwt. 18 root root 132K Feb 27 16:28 .. -rw-r--r-- 1 kkarri waxmanlab 107 Feb 27 16:28 Condition_1.txt -rw-r--r-- 1 kkarri waxmanlab 109 Feb 27 16:28 Condition_2.txt drwxr-xr-x 4 kkarri waxmanlab 4.0K Feb 27 16:29 Input -rw-r--r-- 1 kkarri waxmanlab 72M Feb 27 16:28 RefSeq_GeneBody.gtf -rwxr-xr-x 1 kkarri waxmanlab 17K Feb 27 16:28 differentialAnalysis.R ========================================================== Re-naming files in OUTPUT_DIR Need to append the COUNT_PROGRAM name to all output files List files in OUTPUT_DIR total 15M drwxr-sr-x 2 kkarri waxmanlab 32K Feb 27 16:29 . drwxr-sr-x 6 kkarri waxmanlab 32K Feb 27 16:28 .. -rw-r--r-- 1 kkarri waxmanlab 292 Feb 27 16:29 DiffExp_3a_Venn_Tables_Female_3h_TCPOBOP_G123_M11M12_G123_M11M12_Female_3h_Vehicle_G123_M9M10_G123_M9M10_HTSeq.txt -rw-r--r-- 1 kkarri waxmanlab 8.7M Feb 27 16:29 DiffExp_v2_GeneBody_Female_3h_Vehicle_G123_M9M10_Female_3h_TCPOBOP_G123_M11M12_HTSeq.txt -rw-r--r-- 1 kkarri waxmanlab 2.5K Feb 27 16:29 Down_Genes_DESeq_GeneBody_Female_3h_TCPOBOP_G123_M11M12_G123_M11M12_Female_3h_Vehicle_G123_M9M10_G123_M9M10_HTSeq.txt -rw-r--r-- 1 kkarri waxmanlab 5.6K Feb 27 16:29 Down_Genes_EdgeR_GeneBody_Female_3h_TCPOBOP_G123_M11M12_G123_M11M12_Female_3h_Vehicle_G123_M9M10_G123_M9M10_HTSeq.txt -rw-r--r-- 1 kkarri waxmanlab 2.3M Feb 27 16:29 Female_3h_TCPOBOP_G123_M11M12_G123_M11M12_vs_Female_3h_Vehicle_G123_M9M10_G123_M9M10_DiffExp_v2_GeneBody_forSEGEXUpload_DESeq_HTSeq.txt -rw-r--r-- 1 kkarri waxmanlab 2.3M Feb 27 16:29 Female_3h_TCPOBOP_G123_M11M12_G123_M11M12_vs_Female_3h_Vehicle_G123_M9M10_G123_M9M10_DiffExp_v2_GeneBody_forSEGEXUpload_EdgeR_HTSeq.txt -rw-r--r-- 1 kkarri waxmanlab 2.3M Feb 27 16:29 Female_3h_TCPOBOP_G123_M11M12_G123_M11M12_vs_Female_3h_Vehicle_G123_M9M10_G123_M9M10_DiffExp_v2_GeneBody_forSEGEXUpload_TPM_DESeq_HTSeq.txt -rw-r--r-- 1 kkarri waxmanlab 2.3M Feb 27 16:29 Female_3h_TCPOBOP_G123_M11M12_G123_M11M12_vs_Female_3h_Vehicle_G123_M9M10_G123_M9M10_DiffExp_v2_GeneBody_forSEGEXUpload_TPM_EdgeR_HTSeq.txt -rw-r--r-- 1 kkarri waxmanlab 8.1K Feb 27 16:29 Up_Genes_DESeq_GeneBody_Female_3h_TCPOBOP_G123_M11M12_G123_M11M12_Female_3h_Vehicle_G123_M9M10_G123_M9M10_HTSeq.txt -rw-r--r-- 1 kkarri waxmanlab 12K Feb 27 16:29 Up_Genes_EdgeR_GeneBody_Female_3h_TCPOBOP_G123_M11M12_G123_M11M12_Female_3h_Vehicle_G123_M9M10_G123_M9M10_HTSeq.txt -rw-r--r-- 1 kkarri waxmanlab 39K Feb 27 16:29 Venn_Down.DESeq.GeneBody.HTSeq.Down.EdgeR.GeneBody.HTSeq_HTSeq.png -rw-r--r-- 1 kkarri waxmanlab 38K Feb 27 16:29 Venn_Up.DESeq.GeneBody.HTSeq.Up.EdgeR.GeneBody.HTSeq_HTSeq.png ========================================================== ========================================================== Finished on : Wed Feb 27 16:29:59 EST 2019 1 minutes and 0 seconds elapsed. ==========================================================