[2022-02-07 19:49:44,503] multiqc [DEBUG ] This is MultiQC v1.11 [2022-02-07 19:49:44,503] multiqc [DEBUG ] No MultiQC config found: /projectnb2/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2022-02-07 19:49:44,503] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2022-02-07 19:49:44,504] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2022-02-07 19:49:44,504] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi /projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES /projectnb2/wax-dk/max/FIRKO/FIRKO/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/FIRKO/FIRKO/Scripts/06_CollectMetrics/ [2022-02-07 19:49:45,202] multiqc [DEBUG ] Latest MultiQC version is v1.11 [2022-02-07 19:49:45,202] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi /projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES /projectnb2/wax-dk/max/FIRKO/FIRKO/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/FIRKO/FIRKO/Scripts/06_CollectMetrics/ [2022-02-07 19:49:45,203] multiqc [DEBUG ] Working dir : /projectnb2/wax-dk/max/FIRKO/FIRKO/Scripts/14_final_summary/multiqc_report [2022-02-07 19:49:45,203] multiqc [DEBUG ] Template : default [2022-02-07 19:49:45,203] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2022-02-07 19:49:45,203] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2022-02-07 19:49:45,203] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmp1000qr7l [2022-02-07 19:49:45,640] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES [2022-02-07 19:49:45,641] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/FIRKO/FIRKO/Scripts/03_FASTQC [2022-02-07 19:49:45,641] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/FIRKO/FIRKO/Scripts/06_CollectMetrics [2022-02-07 19:49:45,696] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 593_R2_001.fastq.gz [2022-02-07 19:49:45,696] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 593_R1_001.fastq.gz [2022-02-07 19:49:45,839] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FIRKO_S593_metrics [2022-02-07 19:49:45,841] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FIRKO_S593_metrics [2022-02-07 19:49:45,842] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FIRKO_S593_metrics [2022-02-07 19:49:45,842] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FIRKO_S593_metrics [2022-02-07 19:49:45,846] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FIRKO_S593_metrics [2022-02-07 19:49:45,908] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: FIRKO_S593_hist.pdf [2022-02-07 19:49:45,963] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FIRKO_S593_featureCounts.out [2022-02-07 19:49:45,965] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FIRKO_S593_featureCounts.out [2022-02-07 19:49:45,965] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FIRKO_S593_featureCounts.out [2022-02-07 19:49:45,965] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FIRKO_S593_featureCounts.out [2022-02-07 19:49:45,969] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: FIRKO_S593_featureCounts.out [2022-02-07 19:49:45,969] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: FIRKO_S593_featureCounts.out [2022-02-07 19:49:45,969] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FIRKO_S593_featureCounts.out [2022-02-07 19:49:45,970] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: FIRKO_S593_featureCounts.out [2022-02-07 19:49:45,970] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: FIRKO_S593_featureCounts.out [2022-02-07 19:49:45,970] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: FIRKO_S593_featureCounts.out [2022-02-07 19:49:45,970] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: FIRKO_S593_featureCounts.out [2022-02-07 19:49:45,970] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: FIRKO_S593_featureCounts.out [2022-02-07 19:49:45,992] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: FIRKO_S593_featureCounts.out [2022-02-07 19:49:47,240] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FIRKO_S593_featureCounts.out [2022-02-07 19:49:47,242] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FIRKO_S593_featureCounts.out [2022-02-07 19:49:47,242] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FIRKO_S593_featureCounts.out [2022-02-07 19:49:47,242] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FIRKO_S593_featureCounts.out [2022-02-07 19:49:47,247] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: FIRKO_S593_featureCounts.out [2022-02-07 19:49:47,247] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: FIRKO_S593_featureCounts.out [2022-02-07 19:49:47,247] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FIRKO_S593_featureCounts.out [2022-02-07 19:49:47,247] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: FIRKO_S593_featureCounts.out [2022-02-07 19:49:47,247] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: FIRKO_S593_featureCounts.out [2022-02-07 19:49:47,247] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: FIRKO_S593_featureCounts.out [2022-02-07 19:49:47,247] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: FIRKO_S593_featureCounts.out [2022-02-07 19:49:47,247] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: FIRKO_S593_featureCounts.out [2022-02-07 19:49:47,270] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: FIRKO_S593_featureCounts.out [2022-02-07 19:49:48,477] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FIRKO_S593_metrics [2022-02-07 19:49:48,480] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FIRKO_S593_metrics [2022-02-07 19:49:48,484] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FIRKO_S593_metrics [2022-02-07 19:49:48,527] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 658_R1.fastq.gz [2022-02-07 19:49:48,527] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 658_R2.fastq.gz [2022-02-07 19:49:48,631] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: FIRKO_S658_hist.pdf [2022-02-07 19:49:48,636] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FIRKO_S658_metrics [2022-02-07 19:49:48,639] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FIRKO_S658_metrics [2022-02-07 19:49:48,639] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FIRKO_S658_metrics [2022-02-07 19:49:48,639] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FIRKO_S658_metrics [2022-02-07 19:49:48,645] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FIRKO_S658_metrics [2022-02-07 19:49:48,755] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FIRKO_S658_featureCounts.out [2022-02-07 19:49:48,757] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FIRKO_S658_featureCounts.out [2022-02-07 19:49:48,758] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FIRKO_S658_featureCounts.out [2022-02-07 19:49:48,758] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FIRKO_S658_featureCounts.out [2022-02-07 19:49:48,762] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: FIRKO_S658_featureCounts.out [2022-02-07 19:49:48,762] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: FIRKO_S658_featureCounts.out [2022-02-07 19:49:48,762] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FIRKO_S658_featureCounts.out [2022-02-07 19:49:48,762] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: FIRKO_S658_featureCounts.out [2022-02-07 19:49:48,763] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: FIRKO_S658_featureCounts.out [2022-02-07 19:49:48,763] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: FIRKO_S658_featureCounts.out [2022-02-07 19:49:48,763] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: FIRKO_S658_featureCounts.out [2022-02-07 19:49:48,763] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: FIRKO_S658_featureCounts.out [2022-02-07 19:49:48,785] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: FIRKO_S658_featureCounts.out [2022-02-07 19:49:50,028] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FIRKO_S658_featureCounts.out [2022-02-07 19:49:50,031] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FIRKO_S658_featureCounts.out [2022-02-07 19:49:50,031] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FIRKO_S658_featureCounts.out [2022-02-07 19:49:50,031] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FIRKO_S658_featureCounts.out [2022-02-07 19:49:50,036] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: FIRKO_S658_featureCounts.out [2022-02-07 19:49:50,036] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: FIRKO_S658_featureCounts.out [2022-02-07 19:49:50,036] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FIRKO_S658_featureCounts.out [2022-02-07 19:49:50,036] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: FIRKO_S658_featureCounts.out [2022-02-07 19:49:50,036] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: FIRKO_S658_featureCounts.out [2022-02-07 19:49:50,036] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: FIRKO_S658_featureCounts.out [2022-02-07 19:49:50,036] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: FIRKO_S658_featureCounts.out [2022-02-07 19:49:50,036] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: FIRKO_S658_featureCounts.out [2022-02-07 19:49:50,059] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: FIRKO_S658_featureCounts.out [2022-02-07 19:49:51,272] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FIRKO_S658_metrics [2022-02-07 19:49:51,275] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FIRKO_S658_metrics [2022-02-07 19:49:51,280] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FIRKO_S658_metrics [2022-02-07 19:49:51,322] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 661_R1_001.fastq.gz [2022-02-07 19:49:51,322] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 661_R2_001.fastq.gz [2022-02-07 19:49:51,423] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: FIRKO_S661_hist.pdf [2022-02-07 19:49:51,428] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FIRKO_S661_metrics [2022-02-07 19:49:51,430] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FIRKO_S661_metrics [2022-02-07 19:49:51,430] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FIRKO_S661_metrics [2022-02-07 19:49:51,431] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FIRKO_S661_metrics [2022-02-07 19:49:51,435] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FIRKO_S661_metrics [2022-02-07 19:49:51,539] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FIRKO_S661_featureCounts.out [2022-02-07 19:49:51,541] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FIRKO_S661_featureCounts.out [2022-02-07 19:49:51,542] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FIRKO_S661_featureCounts.out [2022-02-07 19:49:51,542] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FIRKO_S661_featureCounts.out [2022-02-07 19:49:51,546] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: FIRKO_S661_featureCounts.out [2022-02-07 19:49:51,546] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: FIRKO_S661_featureCounts.out [2022-02-07 19:49:51,547] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FIRKO_S661_featureCounts.out [2022-02-07 19:49:51,547] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: FIRKO_S661_featureCounts.out [2022-02-07 19:49:51,547] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: FIRKO_S661_featureCounts.out [2022-02-07 19:49:51,547] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: FIRKO_S661_featureCounts.out [2022-02-07 19:49:51,547] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: FIRKO_S661_featureCounts.out [2022-02-07 19:49:51,547] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: FIRKO_S661_featureCounts.out [2022-02-07 19:49:51,569] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: FIRKO_S661_featureCounts.out [2022-02-07 19:49:52,802] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FIRKO_S661_featureCounts.out [2022-02-07 19:49:52,805] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FIRKO_S661_featureCounts.out [2022-02-07 19:49:52,805] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FIRKO_S661_featureCounts.out [2022-02-07 19:49:52,805] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FIRKO_S661_featureCounts.out [2022-02-07 19:49:52,810] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: FIRKO_S661_featureCounts.out [2022-02-07 19:49:52,810] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: FIRKO_S661_featureCounts.out [2022-02-07 19:49:52,810] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FIRKO_S661_featureCounts.out [2022-02-07 19:49:52,810] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: FIRKO_S661_featureCounts.out [2022-02-07 19:49:52,810] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: FIRKO_S661_featureCounts.out [2022-02-07 19:49:52,810] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: FIRKO_S661_featureCounts.out [2022-02-07 19:49:52,810] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: FIRKO_S661_featureCounts.out [2022-02-07 19:49:52,810] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: FIRKO_S661_featureCounts.out [2022-02-07 19:49:52,834] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: FIRKO_S661_featureCounts.out [2022-02-07 19:49:54,086] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FIRKO_S661_metrics [2022-02-07 19:49:54,088] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FIRKO_S661_metrics [2022-02-07 19:49:54,093] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FIRKO_S661_metrics [2022-02-07 19:49:54,148] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 649_R2.fastq.gz [2022-02-07 19:49:54,148] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 649_R1.fastq.gz [2022-02-07 19:49:54,247] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: FIRKO_S649_hist.pdf [2022-02-07 19:49:54,252] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FIRKO_S649_metrics [2022-02-07 19:49:54,254] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FIRKO_S649_metrics [2022-02-07 19:49:54,255] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FIRKO_S649_metrics [2022-02-07 19:49:54,255] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FIRKO_S649_metrics [2022-02-07 19:49:54,259] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FIRKO_S649_metrics [2022-02-07 19:49:54,386] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FIRKO_S649_featureCounts.out [2022-02-07 19:49:54,388] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FIRKO_S649_featureCounts.out [2022-02-07 19:49:54,389] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FIRKO_S649_featureCounts.out [2022-02-07 19:49:54,389] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FIRKO_S649_featureCounts.out [2022-02-07 19:49:54,393] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: FIRKO_S649_featureCounts.out [2022-02-07 19:49:54,393] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: FIRKO_S649_featureCounts.out [2022-02-07 19:49:54,394] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FIRKO_S649_featureCounts.out [2022-02-07 19:49:54,394] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: FIRKO_S649_featureCounts.out [2022-02-07 19:49:54,394] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: FIRKO_S649_featureCounts.out [2022-02-07 19:49:54,394] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: FIRKO_S649_featureCounts.out [2022-02-07 19:49:54,394] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: FIRKO_S649_featureCounts.out [2022-02-07 19:49:54,394] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: FIRKO_S649_featureCounts.out [2022-02-07 19:49:54,416] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: FIRKO_S649_featureCounts.out [2022-02-07 19:49:55,618] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FIRKO_S649_featureCounts.out [2022-02-07 19:49:55,621] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FIRKO_S649_featureCounts.out [2022-02-07 19:49:55,621] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FIRKO_S649_featureCounts.out [2022-02-07 19:49:55,621] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FIRKO_S649_featureCounts.out [2022-02-07 19:49:55,625] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: FIRKO_S649_featureCounts.out [2022-02-07 19:49:55,626] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: FIRKO_S649_featureCounts.out [2022-02-07 19:49:55,626] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FIRKO_S649_featureCounts.out [2022-02-07 19:49:55,626] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: FIRKO_S649_featureCounts.out [2022-02-07 19:49:55,626] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: FIRKO_S649_featureCounts.out [2022-02-07 19:49:55,626] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: FIRKO_S649_featureCounts.out [2022-02-07 19:49:55,626] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: FIRKO_S649_featureCounts.out [2022-02-07 19:49:55,626] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: FIRKO_S649_featureCounts.out [2022-02-07 19:49:55,648] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: FIRKO_S649_featureCounts.out [2022-02-07 19:49:56,810] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FIRKO_S649_metrics [2022-02-07 19:49:56,813] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FIRKO_S649_metrics [2022-02-07 19:49:56,818] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FIRKO_S649_metrics [2022-02-07 19:49:56,860] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 584_R1_001.fastq.gz [2022-02-07 19:49:56,860] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 584_R2_001.fastq.gz [2022-02-07 19:49:56,991] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FIRKO_S584_metrics [2022-02-07 19:49:56,993] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FIRKO_S584_metrics [2022-02-07 19:49:56,994] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FIRKO_S584_metrics [2022-02-07 19:49:56,994] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FIRKO_S584_metrics [2022-02-07 19:49:56,998] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FIRKO_S584_metrics [2022-02-07 19:49:57,048] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: FIRKO_S584_hist.pdf [2022-02-07 19:49:57,097] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FIRKO_S584_featureCounts.out [2022-02-07 19:49:57,099] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FIRKO_S584_featureCounts.out [2022-02-07 19:49:57,100] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FIRKO_S584_featureCounts.out [2022-02-07 19:49:57,100] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FIRKO_S584_featureCounts.out [2022-02-07 19:49:57,104] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: FIRKO_S584_featureCounts.out [2022-02-07 19:49:57,104] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: FIRKO_S584_featureCounts.out [2022-02-07 19:49:57,104] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FIRKO_S584_featureCounts.out [2022-02-07 19:49:57,104] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: FIRKO_S584_featureCounts.out [2022-02-07 19:49:57,104] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: FIRKO_S584_featureCounts.out [2022-02-07 19:49:57,104] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: FIRKO_S584_featureCounts.out [2022-02-07 19:49:57,104] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: FIRKO_S584_featureCounts.out [2022-02-07 19:49:57,104] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: FIRKO_S584_featureCounts.out [2022-02-07 19:49:57,124] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: FIRKO_S584_featureCounts.out [2022-02-07 19:49:58,194] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FIRKO_S584_featureCounts.out [2022-02-07 19:49:58,197] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FIRKO_S584_featureCounts.out [2022-02-07 19:49:58,197] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FIRKO_S584_featureCounts.out [2022-02-07 19:49:58,197] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FIRKO_S584_featureCounts.out [2022-02-07 19:49:58,202] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: FIRKO_S584_featureCounts.out [2022-02-07 19:49:58,202] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: FIRKO_S584_featureCounts.out [2022-02-07 19:49:58,202] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FIRKO_S584_featureCounts.out [2022-02-07 19:49:58,202] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: FIRKO_S584_featureCounts.out [2022-02-07 19:49:58,202] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: FIRKO_S584_featureCounts.out [2022-02-07 19:49:58,202] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: FIRKO_S584_featureCounts.out [2022-02-07 19:49:58,202] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: FIRKO_S584_featureCounts.out [2022-02-07 19:49:58,202] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: FIRKO_S584_featureCounts.out [2022-02-07 19:49:58,224] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: FIRKO_S584_featureCounts.out [2022-02-07 19:49:59,290] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FIRKO_S584_metrics [2022-02-07 19:49:59,292] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FIRKO_S584_metrics [2022-02-07 19:49:59,297] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FIRKO_S584_metrics [2022-02-07 19:49:59,340] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 662_R2_001.fastq.gz [2022-02-07 19:49:59,340] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 662_R1_001.fastq.gz [2022-02-07 19:49:59,444] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: FIRKO_S662_hist.pdf [2022-02-07 19:49:59,449] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FIRKO_S662_metrics [2022-02-07 19:49:59,451] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FIRKO_S662_metrics [2022-02-07 19:49:59,452] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FIRKO_S662_metrics [2022-02-07 19:49:59,452] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FIRKO_S662_metrics [2022-02-07 19:49:59,457] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FIRKO_S662_metrics [2022-02-07 19:49:59,586] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FIRKO_S662_featureCounts.out [2022-02-07 19:49:59,588] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FIRKO_S662_featureCounts.out [2022-02-07 19:49:59,588] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FIRKO_S662_featureCounts.out [2022-02-07 19:49:59,588] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FIRKO_S662_featureCounts.out [2022-02-07 19:49:59,593] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: FIRKO_S662_featureCounts.out [2022-02-07 19:49:59,593] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: FIRKO_S662_featureCounts.out [2022-02-07 19:49:59,593] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FIRKO_S662_featureCounts.out [2022-02-07 19:49:59,593] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: FIRKO_S662_featureCounts.out [2022-02-07 19:49:59,593] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: FIRKO_S662_featureCounts.out [2022-02-07 19:49:59,593] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: FIRKO_S662_featureCounts.out [2022-02-07 19:49:59,593] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: FIRKO_S662_featureCounts.out [2022-02-07 19:49:59,593] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: FIRKO_S662_featureCounts.out [2022-02-07 19:49:59,615] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: FIRKO_S662_featureCounts.out [2022-02-07 19:50:00,775] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FIRKO_S662_featureCounts.out [2022-02-07 19:50:00,777] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FIRKO_S662_featureCounts.out [2022-02-07 19:50:00,788] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FIRKO_S662_featureCounts.out [2022-02-07 19:50:00,788] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FIRKO_S662_featureCounts.out [2022-02-07 19:50:00,793] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: FIRKO_S662_featureCounts.out [2022-02-07 19:50:00,793] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: FIRKO_S662_featureCounts.out [2022-02-07 19:50:00,793] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FIRKO_S662_featureCounts.out [2022-02-07 19:50:00,793] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: FIRKO_S662_featureCounts.out [2022-02-07 19:50:00,793] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: FIRKO_S662_featureCounts.out [2022-02-07 19:50:00,793] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: FIRKO_S662_featureCounts.out [2022-02-07 19:50:00,793] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: FIRKO_S662_featureCounts.out [2022-02-07 19:50:00,793] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: FIRKO_S662_featureCounts.out [2022-02-07 19:50:00,815] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: FIRKO_S662_featureCounts.out [2022-02-07 19:50:01,953] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FIRKO_S662_metrics [2022-02-07 19:50:01,956] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FIRKO_S662_metrics [2022-02-07 19:50:01,960] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FIRKO_S662_metrics [2022-02-07 19:50:02,032] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 664_R1_001.fastq.gz [2022-02-07 19:50:02,032] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 664_R2_001.fastq.gz [2022-02-07 19:50:02,186] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FIRKO_S664_metrics [2022-02-07 19:50:02,188] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FIRKO_S664_metrics [2022-02-07 19:50:02,189] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FIRKO_S664_metrics [2022-02-07 19:50:02,189] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FIRKO_S664_metrics [2022-02-07 19:50:02,193] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FIRKO_S664_metrics [2022-02-07 19:50:02,239] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: FIRKO_S664_hist.pdf [2022-02-07 19:50:02,259] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FIRKO_S664_featureCounts.out [2022-02-07 19:50:02,262] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FIRKO_S664_featureCounts.out [2022-02-07 19:50:02,262] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FIRKO_S664_featureCounts.out [2022-02-07 19:50:02,262] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FIRKO_S664_featureCounts.out [2022-02-07 19:50:02,267] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: FIRKO_S664_featureCounts.out [2022-02-07 19:50:02,267] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: FIRKO_S664_featureCounts.out [2022-02-07 19:50:02,267] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FIRKO_S664_featureCounts.out [2022-02-07 19:50:02,267] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: FIRKO_S664_featureCounts.out [2022-02-07 19:50:02,267] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: FIRKO_S664_featureCounts.out [2022-02-07 19:50:02,267] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: FIRKO_S664_featureCounts.out [2022-02-07 19:50:02,267] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: FIRKO_S664_featureCounts.out [2022-02-07 19:50:02,267] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: FIRKO_S664_featureCounts.out [2022-02-07 19:50:02,287] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: FIRKO_S664_featureCounts.out [2022-02-07 19:50:03,373] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FIRKO_S664_featureCounts.out [2022-02-07 19:50:03,376] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FIRKO_S664_featureCounts.out [2022-02-07 19:50:03,376] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FIRKO_S664_featureCounts.out [2022-02-07 19:50:03,376] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FIRKO_S664_featureCounts.out [2022-02-07 19:50:03,380] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: FIRKO_S664_featureCounts.out [2022-02-07 19:50:03,380] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: FIRKO_S664_featureCounts.out [2022-02-07 19:50:03,380] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FIRKO_S664_featureCounts.out [2022-02-07 19:50:03,380] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: FIRKO_S664_featureCounts.out [2022-02-07 19:50:03,380] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: FIRKO_S664_featureCounts.out [2022-02-07 19:50:03,380] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: FIRKO_S664_featureCounts.out [2022-02-07 19:50:03,381] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: FIRKO_S664_featureCounts.out [2022-02-07 19:50:03,381] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: FIRKO_S664_featureCounts.out [2022-02-07 19:50:03,402] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: FIRKO_S664_featureCounts.out [2022-02-07 19:50:04,585] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FIRKO_S664_metrics [2022-02-07 19:50:04,588] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FIRKO_S664_metrics [2022-02-07 19:50:04,592] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FIRKO_S664_metrics [2022-02-07 19:50:04,635] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 665_R1_001.fastq.gz [2022-02-07 19:50:04,635] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 665_R2_001.fastq.gz [2022-02-07 19:50:04,741] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: FIRKO_S665_hist.pdf [2022-02-07 19:50:04,746] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FIRKO_S665_metrics [2022-02-07 19:50:04,749] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FIRKO_S665_metrics [2022-02-07 19:50:04,749] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FIRKO_S665_metrics [2022-02-07 19:50:04,749] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FIRKO_S665_metrics [2022-02-07 19:50:04,754] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FIRKO_S665_metrics [2022-02-07 19:50:04,864] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FIRKO_S665_featureCounts.out [2022-02-07 19:50:04,866] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FIRKO_S665_featureCounts.out [2022-02-07 19:50:04,867] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FIRKO_S665_featureCounts.out [2022-02-07 19:50:04,867] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FIRKO_S665_featureCounts.out [2022-02-07 19:50:04,871] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: FIRKO_S665_featureCounts.out [2022-02-07 19:50:04,871] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: FIRKO_S665_featureCounts.out [2022-02-07 19:50:04,871] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FIRKO_S665_featureCounts.out [2022-02-07 19:50:04,871] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: FIRKO_S665_featureCounts.out [2022-02-07 19:50:04,871] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: FIRKO_S665_featureCounts.out [2022-02-07 19:50:04,871] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: FIRKO_S665_featureCounts.out [2022-02-07 19:50:04,871] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: FIRKO_S665_featureCounts.out [2022-02-07 19:50:04,872] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: FIRKO_S665_featureCounts.out [2022-02-07 19:50:04,892] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: FIRKO_S665_featureCounts.out [2022-02-07 19:50:06,048] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FIRKO_S665_featureCounts.out [2022-02-07 19:50:06,050] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FIRKO_S665_featureCounts.out [2022-02-07 19:50:06,060] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FIRKO_S665_featureCounts.out [2022-02-07 19:50:06,060] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FIRKO_S665_featureCounts.out [2022-02-07 19:50:06,065] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: FIRKO_S665_featureCounts.out [2022-02-07 19:50:06,065] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: FIRKO_S665_featureCounts.out [2022-02-07 19:50:06,065] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FIRKO_S665_featureCounts.out [2022-02-07 19:50:06,065] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: FIRKO_S665_featureCounts.out [2022-02-07 19:50:06,065] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: FIRKO_S665_featureCounts.out [2022-02-07 19:50:06,065] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: FIRKO_S665_featureCounts.out [2022-02-07 19:50:06,065] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: FIRKO_S665_featureCounts.out [2022-02-07 19:50:06,065] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: FIRKO_S665_featureCounts.out [2022-02-07 19:50:06,088] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: FIRKO_S665_featureCounts.out [2022-02-07 19:50:07,233] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FIRKO_S665_metrics [2022-02-07 19:50:07,236] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FIRKO_S665_metrics [2022-02-07 19:50:07,241] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FIRKO_S665_metrics [2022-02-07 19:50:07,289] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 594_R1_001.fastq.gz [2022-02-07 19:50:07,289] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 594_R2_001.fastq.gz [2022-02-07 19:50:07,405] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FIRKO_S594_metrics [2022-02-07 19:50:07,408] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FIRKO_S594_metrics [2022-02-07 19:50:07,408] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FIRKO_S594_metrics [2022-02-07 19:50:07,408] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FIRKO_S594_metrics [2022-02-07 19:50:07,413] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FIRKO_S594_metrics [2022-02-07 19:50:07,478] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: FIRKO_S594_hist.pdf [2022-02-07 19:50:07,503] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FIRKO_S594_featureCounts.out [2022-02-07 19:50:07,505] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FIRKO_S594_featureCounts.out [2022-02-07 19:50:07,505] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FIRKO_S594_featureCounts.out [2022-02-07 19:50:07,505] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FIRKO_S594_featureCounts.out [2022-02-07 19:50:07,510] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: FIRKO_S594_featureCounts.out [2022-02-07 19:50:07,510] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: FIRKO_S594_featureCounts.out [2022-02-07 19:50:07,510] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FIRKO_S594_featureCounts.out [2022-02-07 19:50:07,510] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: FIRKO_S594_featureCounts.out [2022-02-07 19:50:07,510] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: FIRKO_S594_featureCounts.out [2022-02-07 19:50:07,510] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: FIRKO_S594_featureCounts.out [2022-02-07 19:50:07,510] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: FIRKO_S594_featureCounts.out [2022-02-07 19:50:07,510] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: FIRKO_S594_featureCounts.out [2022-02-07 19:50:07,531] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: FIRKO_S594_featureCounts.out [2022-02-07 19:50:08,666] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FIRKO_S594_featureCounts.out [2022-02-07 19:50:08,669] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FIRKO_S594_featureCounts.out [2022-02-07 19:50:08,670] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FIRKO_S594_featureCounts.out [2022-02-07 19:50:08,670] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FIRKO_S594_featureCounts.out [2022-02-07 19:50:08,675] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: FIRKO_S594_featureCounts.out [2022-02-07 19:50:08,675] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: FIRKO_S594_featureCounts.out [2022-02-07 19:50:08,675] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FIRKO_S594_featureCounts.out [2022-02-07 19:50:08,675] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: FIRKO_S594_featureCounts.out [2022-02-07 19:50:08,675] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: FIRKO_S594_featureCounts.out [2022-02-07 19:50:08,675] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: FIRKO_S594_featureCounts.out [2022-02-07 19:50:08,675] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: FIRKO_S594_featureCounts.out [2022-02-07 19:50:08,675] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: FIRKO_S594_featureCounts.out [2022-02-07 19:50:08,698] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: FIRKO_S594_featureCounts.out [2022-02-07 19:50:09,905] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FIRKO_S594_metrics [2022-02-07 19:50:09,908] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FIRKO_S594_metrics [2022-02-07 19:50:09,912] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FIRKO_S594_metrics [2022-02-07 19:50:09,960] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2022-02-07 19:50:09,963] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2022-02-07 19:50:09,967] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2022-02-07 19:50:09,981] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2022-02-07 19:50:09,984] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2022-02-07 19:50:09,988] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2022-02-07 19:50:10,002] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2022-02-07 19:50:10,005] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2022-02-07 19:50:10,039] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FASTQC.qsub [2022-02-07 19:50:10,041] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FASTQC.qsub [2022-02-07 19:50:10,042] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FASTQC.qsub [2022-02-07 19:50:10,042] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FASTQC.qsub [2022-02-07 19:50:10,046] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FASTQC.qsub [2022-02-07 19:50:10,075] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_FIRKO_S649.o2461453 [2022-02-07 19:50:10,078] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_FIRKO_S649.o2461453 [2022-02-07 19:50:10,078] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_FIRKO_S649.o2461453 [2022-02-07 19:50:10,079] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_FIRKO_S649.o2461453 [2022-02-07 19:50:10,083] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_FIRKO_S649.o2461453 [2022-02-07 19:50:10,113] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_FIRKO_S594.o2461460 [2022-02-07 19:50:10,115] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_FIRKO_S594.o2461460 [2022-02-07 19:50:10,116] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_FIRKO_S594.o2461460 [2022-02-07 19:50:10,116] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_FIRKO_S594.o2461460 [2022-02-07 19:50:10,121] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_FIRKO_S594.o2461460 [2022-02-07 19:50:10,143] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_FIRKO_S664.o2461457 [2022-02-07 19:50:10,146] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_FIRKO_S664.o2461457 [2022-02-07 19:50:10,146] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_FIRKO_S664.o2461457 [2022-02-07 19:50:10,146] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_FIRKO_S664.o2461457 [2022-02-07 19:50:10,151] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_FIRKO_S664.o2461457 [2022-02-07 19:50:10,180] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_FIRKO_S593.o2461459 [2022-02-07 19:50:10,182] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_FIRKO_S593.o2461459 [2022-02-07 19:50:10,183] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: 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longranger/invocation because it exceeded search pattern filesize limit: Step_03_FIRKO_S658.o2461454 [2022-02-07 19:50:10,257] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_FIRKO_S665.o2461452 [2022-02-07 19:50:10,259] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_FIRKO_S665.o2461452 [2022-02-07 19:50:10,259] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_FIRKO_S665.o2461452 [2022-02-07 19:50:10,259] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_FIRKO_S665.o2461452 [2022-02-07 19:50:10,264] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_FIRKO_S665.o2461452 [2022-02-07 19:50:10,295] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_FIRKO_S661.o2461455 [2022-02-07 19:50:10,298] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_FIRKO_S661.o2461455 [2022-02-07 19:50:10,298] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_FIRKO_S661.o2461455 [2022-02-07 19:50:10,298] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_FIRKO_S661.o2461455 [2022-02-07 19:50:10,303] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_FIRKO_S661.o2461455 [2022-02-07 19:50:10,332] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_FIRKO_S584.o2461458 [2022-02-07 19:50:10,335] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_FIRKO_S584.o2461458 [2022-02-07 19:50:10,335] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_FIRKO_S584.o2461458 [2022-02-07 19:50:10,335] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_FIRKO_S584.o2461458 [2022-02-07 19:50:10,340] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_FIRKO_S584.o2461458 [2022-02-07 19:50:10,367] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_FIRKO_S662.o2461456 [2022-02-07 19:50:10,370] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_FIRKO_S662.o2461456 [2022-02-07 19:50:10,370] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_FIRKO_S662.o2461456 [2022-02-07 19:50:10,370] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_FIRKO_S662.o2461456 [2022-02-07 19:50:10,375] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_FIRKO_S662.o2461456 [2022-02-07 19:50:10,467] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FIRKO_S649_read_length.txt [2022-02-07 19:50:10,470] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FIRKO_S649_read_length.txt [2022-02-07 19:50:10,470] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FIRKO_S649_read_length.txt [2022-02-07 19:50:10,470] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FIRKO_S649_read_length.txt [2022-02-07 19:50:10,475] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FIRKO_S649_read_length.txt [2022-02-07 19:50:10,501] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Read_Length_Stats.txt [2022-02-07 19:50:10,504] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Read_Length_Stats.txt [2022-02-07 19:50:10,504] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Read_Length_Stats.txt [2022-02-07 19:50:10,504] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Read_Length_Stats.txt [2022-02-07 19:50:10,508] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Read_Length_Stats.txt [2022-02-07 19:50:10,570] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FIRKO_S658_read_length.txt [2022-02-07 19:50:10,573] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FIRKO_S658_read_length.txt [2022-02-07 19:50:10,573] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FIRKO_S658_read_length.txt [2022-02-07 19:50:10,573] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FIRKO_S658_read_length.txt [2022-02-07 19:50:10,578] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FIRKO_S658_read_length.txt [2022-02-07 19:50:10,673] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: 662_R1_001_fastqc.html [2022-02-07 19:50:10,676] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 662_R1_001_fastqc.html [2022-02-07 19:50:10,676] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: 662_R1_001_fastqc.html [2022-02-07 19:50:10,676] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: 662_R1_001_fastqc.html [2022-02-07 19:50:10,681] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: 662_R1_001_fastqc.html [2022-02-07 19:50:10,681] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 662_R1_001_fastqc.html [2022-02-07 19:50:10,681] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: 662_R1_001_fastqc.html [2022-02-07 19:50:10,681] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 662_R1_001_fastqc.html [2022-02-07 19:50:10,681] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 662_R1_001_fastqc.html [2022-02-07 19:50:10,681] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 662_R1_001_fastqc.html [2022-02-07 19:50:10,682] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: 662_R1_001_fastqc.html [2022-02-07 19:50:10,784] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: 662_R2_001_fastqc.html [2022-02-07 19:50:10,787] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 662_R2_001_fastqc.html [2022-02-07 19:50:10,787] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: 662_R2_001_fastqc.html [2022-02-07 19:50:10,787] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: 662_R2_001_fastqc.html [2022-02-07 19:50:10,792] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: 662_R2_001_fastqc.html [2022-02-07 19:50:10,792] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 662_R2_001_fastqc.html [2022-02-07 19:50:10,792] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: 662_R2_001_fastqc.html [2022-02-07 19:50:10,792] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 662_R2_001_fastqc.html [2022-02-07 19:50:10,792] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 662_R2_001_fastqc.html [2022-02-07 19:50:10,792] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 662_R2_001_fastqc.html [2022-02-07 19:50:10,792] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: 662_R2_001_fastqc.html [2022-02-07 19:50:10,898] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: 658_R1_fastqc.html [2022-02-07 19:50:10,901] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 658_R1_fastqc.html [2022-02-07 19:50:10,901] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: 658_R1_fastqc.html [2022-02-07 19:50:10,901] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: 658_R1_fastqc.html [2022-02-07 19:50:10,906] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: 658_R1_fastqc.html [2022-02-07 19:50:10,907] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 658_R1_fastqc.html [2022-02-07 19:50:10,907] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: 658_R1_fastqc.html [2022-02-07 19:50:10,907] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 658_R1_fastqc.html [2022-02-07 19:50:10,907] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 658_R1_fastqc.html [2022-02-07 19:50:10,907] multiqc [DEBUG ] File 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[2022-02-07 19:50:12,379] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: 649_R1_fastqc.html [2022-02-07 19:50:12,384] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: 649_R1_fastqc.html [2022-02-07 19:50:12,384] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 649_R1_fastqc.html [2022-02-07 19:50:12,384] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: 649_R1_fastqc.html [2022-02-07 19:50:12,384] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 649_R1_fastqc.html [2022-02-07 19:50:12,384] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 649_R1_fastqc.html [2022-02-07 19:50:12,384] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 649_R1_fastqc.html [2022-02-07 19:50:12,384] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: 649_R1_fastqc.html [2022-02-07 19:50:12,481] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: 649_R2_fastqc.html [2022-02-07 19:50:12,483] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 649_R2_fastqc.html [2022-02-07 19:50:12,484] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: 649_R2_fastqc.html [2022-02-07 19:50:12,484] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: 649_R2_fastqc.html [2022-02-07 19:50:12,489] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: 649_R2_fastqc.html [2022-02-07 19:50:12,489] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 649_R2_fastqc.html [2022-02-07 19:50:12,489] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: 649_R2_fastqc.html [2022-02-07 19:50:12,489] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 649_R2_fastqc.html [2022-02-07 19:50:12,489] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 649_R2_fastqc.html [2022-02-07 19:50:12,489] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 649_R2_fastqc.html [2022-02-07 19:50:12,489] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: 649_R2_fastqc.html [2022-02-07 19:50:12,567] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2022-02-07 19:50:12,569] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2022-02-07 19:50:12,570] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2022-02-07 19:50:12,570] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2022-02-07 19:50:12,574] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2022-02-07 19:50:12,590] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectMetrics.qsub [2022-02-07 19:50:12,593] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CollectMetrics.qsub [2022-02-07 19:50:12,593] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: CollectMetrics.qsub [2022-02-07 19:50:12,593] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectMetrics.qsub [2022-02-07 19:50:12,597] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectMetrics.qsub [2022-02-07 19:50:12,612] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2022-02-07 19:50:12,615] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2022-02-07 19:50:12,619] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2022-02-07 19:50:12,633] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2022-02-07 19:50:12,635] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2022-02-07 19:50:12,654] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_FIRKO_S664.o2462827 [2022-02-07 19:50:12,656] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_FIRKO_S664.o2462827 [2022-02-07 19:50:12,656] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_FIRKO_S664.o2462827 [2022-02-07 19:50:12,657] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_FIRKO_S664.o2462827 [2022-02-07 19:50:12,661] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_FIRKO_S664.o2462827 [2022-02-07 19:50:12,679] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_FIRKO_S649.o2462823 [2022-02-07 19:50:12,681] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_FIRKO_S649.o2462823 [2022-02-07 19:50:12,681] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_FIRKO_S649.o2462823 [2022-02-07 19:50:12,682] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_FIRKO_S649.o2462823 [2022-02-07 19:50:12,686] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_FIRKO_S649.o2462823 [2022-02-07 19:50:12,702] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_FIRKO_S661.o2462825 [2022-02-07 19:50:12,704] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_FIRKO_S661.o2462825 [2022-02-07 19:50:12,704] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_FIRKO_S661.o2462825 [2022-02-07 19:50:12,704] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_FIRKO_S661.o2462825 [2022-02-07 19:50:12,709] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_FIRKO_S661.o2462825 [2022-02-07 19:50:12,740] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_FIRKO_S594.o2462830 [2022-02-07 19:50:12,742] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_FIRKO_S594.o2462830 [2022-02-07 19:50:12,742] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_FIRKO_S594.o2462830 [2022-02-07 19:50:12,743] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_FIRKO_S594.o2462830 [2022-02-07 19:50:12,747] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_FIRKO_S594.o2462830 [2022-02-07 19:50:12,815] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_FIRKO_S584.o2462828 [2022-02-07 19:50:12,817] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_FIRKO_S584.o2462828 [2022-02-07 19:50:12,818] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_FIRKO_S584.o2462828 [2022-02-07 19:50:12,818] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_FIRKO_S584.o2462828 [2022-02-07 19:50:12,823] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_FIRKO_S584.o2462828 [2022-02-07 19:50:12,849] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_FIRKO_S665.o2462822 [2022-02-07 19:50:12,851] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_FIRKO_S665.o2462822 [2022-02-07 19:50:12,852] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_FIRKO_S665.o2462822 [2022-02-07 19:50:12,852] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_FIRKO_S665.o2462822 [2022-02-07 19:50:12,857] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_FIRKO_S665.o2462822 [2022-02-07 19:50:12,888] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_FIRKO_S658.o2462824 [2022-02-07 19:50:12,890] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_FIRKO_S658.o2462824 [2022-02-07 19:50:12,890] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_FIRKO_S658.o2462824 [2022-02-07 19:50:12,891] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_FIRKO_S658.o2462824 [2022-02-07 19:50:12,895] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_FIRKO_S658.o2462824 [2022-02-07 19:50:12,929] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_FIRKO_S662.o2462826 [2022-02-07 19:50:12,932] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_FIRKO_S662.o2462826 [2022-02-07 19:50:12,932] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_FIRKO_S662.o2462826 [2022-02-07 19:50:12,932] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_FIRKO_S662.o2462826 [2022-02-07 19:50:12,937] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_FIRKO_S662.o2462826 [2022-02-07 19:50:12,970] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_FIRKO_S593.o2462829 [2022-02-07 19:50:12,973] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_FIRKO_S593.o2462829 [2022-02-07 19:50:12,973] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_FIRKO_S593.o2462829 [2022-02-07 19:50:12,973] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_FIRKO_S593.o2462829 [2022-02-07 19:50:12,977] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_FIRKO_S593.o2462829 [2022-02-07 19:50:13,030] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CollectInsertSizeMetrics_Plots.pdf [2022-02-07 19:50:13,061] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2022-02-07 19:50:13,064] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2022-02-07 19:50:13,064] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2022-02-07 19:50:13,064] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2022-02-07 19:50:13,069] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2022-02-07 19:50:13,069] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2022-02-07 19:50:13,069] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2022-02-07 19:50:13,069] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2022-02-07 19:50:13,069] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2022-02-07 19:50:13,069] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2022-02-07 19:50:13,069] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2022-02-07 19:50:13,069] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2022-02-07 19:50:13,069] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2022-02-07 19:50:13,069] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2022-02-07 19:50:14,226] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2022-02-07 19:50:14,228] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2022-02-07 19:50:14,229] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2022-02-07 19:50:14,229] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2022-02-07 19:50:14,233] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2022-02-07 19:50:14,284] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2022-02-07 19:50:14,287] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2022-02-07 19:50:14,287] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2022-02-07 19:50:14,287] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2022-02-07 19:50:14,292] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2022-02-07 19:50:18,037] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2022-02-07 19:50:18,062] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2022-02-07 19:50:18,065] multiqc [DEBUG ] No samples found: custom_content [2022-02-07 19:50:18,075] multiqc [DEBUG ] No samples found: ccs [2022-02-07 19:50:18,123] multiqc [DEBUG ] No samples found: ngsderive [2022-02-07 19:50:18,166] multiqc [DEBUG ] No samples found: purple [2022-02-07 19:50:18,174] multiqc [DEBUG ] No samples found: conpair [2022-02-07 19:50:18,199] multiqc [DEBUG ] No samples found: lima [2022-02-07 19:50:18,234] multiqc [DEBUG ] No samples found: peddy [2022-02-07 19:50:18,244] multiqc [DEBUG ] No samples found: somalier [2022-02-07 19:50:18,266] multiqc [DEBUG ] No samples found: methylQA [2022-02-07 19:50:18,337] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2022-02-07 19:50:18,337] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2022-02-07 19:50:18,337] multiqc [DEBUG ] No samples found: mosdepth [2022-02-07 19:50:18,346] multiqc [DEBUG ] No samples found: phantompeakqualtools [2022-02-07 19:50:18,362] multiqc [DEBUG ] No samples found: qualimap [2022-02-07 19:50:18,393] multiqc [DEBUG ] No samples found: preseq [2022-02-07 19:50:18,411] multiqc [DEBUG ] No samples found: quast [2022-02-07 19:50:18,440] multiqc [DEBUG ] No samples found: qorts [2022-02-07 19:50:18,473] multiqc [DEBUG ] No samples found: rna_seqc [2022-02-07 19:50:18,514] multiqc [DEBUG ] No samples found: rockhopper [2022-02-07 19:50:18,547] multiqc [DEBUG ] No samples found: rsem [2022-02-07 19:50:18,619] multiqc.modules.rseqc.rseqc [INFO ] Found 9 infer_experiment reports [2022-02-07 19:50:18,655] multiqc [DEBUG ] No samples found: busco [2022-02-07 19:50:18,696] multiqc [DEBUG ] No samples found: bustools [2022-02-07 19:50:18,723] multiqc [DEBUG ] No samples found: goleft_indexcov [2022-02-07 19:50:18,763] multiqc [DEBUG ] No samples found: gffcompare [2022-02-07 19:50:18,772] multiqc [DEBUG ] No samples found: disambiguate [2022-02-07 19:50:18,801] multiqc [DEBUG ] No samples found: supernova [2022-02-07 19:50:18,931] multiqc [DEBUG ] No samples found: deeptools [2022-02-07 19:50:18,969] multiqc [DEBUG ] No samples found: sargasso [2022-02-07 19:50:18,991] multiqc [DEBUG ] No samples found: verifybamid [2022-02-07 19:50:19,033] multiqc [DEBUG ] No samples found: mirtrace [2022-02-07 19:50:19,043] multiqc [DEBUG ] No samples found: happy [2022-02-07 19:50:19,077] multiqc [DEBUG ] No samples found: mirtop [2022-02-07 19:50:19,142] multiqc [DEBUG ] No samples found: sambamba [2022-02-07 19:50:19,156] multiqc [DEBUG ] No samples found: homer [2022-02-07 19:50:19,184] multiqc [DEBUG ] No samples found: hops [2022-02-07 19:50:19,226] multiqc [DEBUG ] No samples found: macs2 [2022-02-07 19:50:19,235] multiqc [DEBUG ] No samples found: theta2 [2022-02-07 19:50:19,260] multiqc [DEBUG ] No samples found: snpeff [2022-02-07 19:50:19,315] multiqc [DEBUG ] No samples found: gatk [2022-02-07 19:50:19,324] multiqc [DEBUG ] No samples found: htseq [2022-02-07 19:50:19,353] multiqc [DEBUG ] No samples found: bcftools [2022-02-07 19:50:19,386] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: FIRKO_S593_sorted [2022-02-07 19:50:19,387] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: FIRKO_S658_sorted [2022-02-07 19:50:19,388] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: FIRKO_S661_sorted [2022-02-07 19:50:19,389] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: FIRKO_S649_sorted [2022-02-07 19:50:19,389] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: FIRKO_S584_sorted [2022-02-07 19:50:19,390] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: FIRKO_S662_sorted [2022-02-07 19:50:19,391] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: FIRKO_S664_sorted [2022-02-07 19:50:19,392] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: FIRKO_S665_sorted [2022-02-07 19:50:19,392] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: FIRKO_S594_sorted [2022-02-07 19:50:19,393] multiqc.modules.featureCounts.feature_counts [INFO ] Found 9 reports [2022-02-07 19:50:19,443] multiqc [DEBUG ] No samples found: fgbio [2022-02-07 19:50:19,564] multiqc [DEBUG ] No samples found: dragen [2022-02-07 19:50:19,594] multiqc [DEBUG ] No samples found: dedup [2022-02-07 19:50:19,642] multiqc [DEBUG ] No samples found: damageprofiler [2022-02-07 19:50:19,874] multiqc [DEBUG ] No samples found: biobambam2 [2022-02-07 19:50:19,902] multiqc [DEBUG ] No samples found: jcvi [2022-02-07 19:50:19,910] multiqc [DEBUG ] No samples found: mtnucratio [2022-02-07 19:50:20,383] multiqc.modules.picard.picard [INFO ] Found 9 InsertSizeMetrics reports [2022-02-07 19:50:20,398] multiqc.modules.picard.picard [INFO ] Found 9 RnaSeqMetrics reports [2022-02-07 19:50:20,429] multiqc [DEBUG ] No samples found: vep [2022-02-07 19:50:20,465] multiqc [DEBUG ] No samples found: sentieon [2022-02-07 19:50:20,477] multiqc [DEBUG ] No samples found: prokka [2022-02-07 19:50:20,502] multiqc [DEBUG ] No samples found: qc3C [2022-02-07 19:50:20,535] multiqc [DEBUG ] No samples found: nanostat [2022-02-07 19:50:20,543] multiqc [DEBUG ] No samples found: samblaster [2022-02-07 19:50:20,643] multiqc.modules.samtools.samtools [INFO ] Found 27 flagstat reports [2022-02-07 19:50:20,672] multiqc [DEBUG ] No samples found: sexdeterrmine [2022-02-07 19:50:20,680] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2022-02-07 19:50:20,689] multiqc [DEBUG ] No samples found: bamtools [2022-02-07 19:50:20,697] multiqc [DEBUG ] No samples found: jellyfish [2022-02-07 19:50:20,713] multiqc [DEBUG ] No samples found: vcftools [2022-02-07 19:50:20,724] multiqc [DEBUG ] No samples found: longranger [2022-02-07 19:50:20,765] multiqc [DEBUG ] No samples found: stacks [2022-02-07 19:50:20,798] multiqc [DEBUG ] No samples found: varscan2 [2022-02-07 19:50:20,818] multiqc [DEBUG ] No samples found: snippy [2022-02-07 19:50:20,892] multiqc [DEBUG ] No samples found: bbmap [2022-02-07 19:50:20,936] multiqc [DEBUG ] No samples found: bismark [2022-02-07 19:50:20,957] multiqc [DEBUG ] No samples found: biscuit [2022-02-07 19:50:20,971] multiqc [DEBUG ] No samples found: hicexplorer [2022-02-07 19:50:20,995] multiqc [DEBUG ] No samples found: hicup [2022-02-07 19:50:21,026] multiqc [DEBUG ] No samples found: hicpro [2022-02-07 19:50:21,034] multiqc [DEBUG ] No samples found: salmon [2022-02-07 19:50:21,042] multiqc [DEBUG ] No samples found: kallisto [2022-02-07 19:50:21,082] multiqc [DEBUG ] No samples found: slamdunk [2022-02-07 19:50:21,113] multiqc.modules.star.star [INFO ] Found 9 reports [2022-02-07 19:50:21,145] multiqc [DEBUG ] No samples found: hisat2 [2022-02-07 19:50:21,191] multiqc [DEBUG ] No samples found: tophat [2022-02-07 19:50:21,230] multiqc [DEBUG ] No samples found: bowtie2 [2022-02-07 19:50:21,242] multiqc [DEBUG ] No samples found: bowtie1 [2022-02-07 19:50:21,271] multiqc [DEBUG ] No samples found: snpsplit [2022-02-07 19:50:21,304] multiqc [DEBUG ] No samples found: odgi [2022-02-07 19:50:21,319] multiqc [DEBUG ] No samples found: pangolin [2022-02-07 19:50:21,328] multiqc [DEBUG ] No samples found: kat [2022-02-07 19:50:21,336] multiqc [DEBUG ] No samples found: leehom [2022-02-07 19:50:21,368] multiqc [DEBUG ] No samples found: adapterRemoval [2022-02-07 19:50:21,377] multiqc [DEBUG ] No samples found: clipandmerge [2022-02-07 19:50:21,405] multiqc [DEBUG ] No samples found: cutadapt [2022-02-07 19:50:21,414] multiqc [DEBUG ] No samples found: flexbar [2022-02-07 19:50:21,447] multiqc [DEBUG ] No samples found: kaiju [2022-02-07 19:50:21,469] multiqc [DEBUG ] No samples found: kraken [2022-02-07 19:50:21,485] multiqc [DEBUG ] No samples found: malt [2022-02-07 19:50:21,505] multiqc [DEBUG ] No samples found: trimmomatic [2022-02-07 19:50:21,515] multiqc [DEBUG ] No samples found: sickle [2022-02-07 19:50:21,524] multiqc [DEBUG ] No samples found: skewer [2022-02-07 19:50:21,532] multiqc [DEBUG ] No samples found: sortmerna [2022-02-07 19:50:21,540] multiqc [DEBUG ] No samples found: biobloomtools [2022-02-07 19:50:21,572] multiqc [DEBUG ] No samples found: fastq_screen [2022-02-07 19:50:21,602] multiqc [DEBUG ] No samples found: afterqc [2022-02-07 19:50:21,639] multiqc [DEBUG ] No samples found: fastp [2022-02-07 19:50:24,155] multiqc.modules.fastqc.fastqc [INFO ] Found 18 reports [2022-02-07 19:50:24,491] multiqc [DEBUG ] No samples found: pychopper [2022-02-07 19:50:24,534] multiqc [DEBUG ] No samples found: pycoqc [2022-02-07 19:50:24,547] multiqc [DEBUG ] No samples found: minionqc [2022-02-07 19:50:24,578] multiqc [DEBUG ] No samples found: multivcfanalyzer [2022-02-07 19:50:24,615] multiqc [DEBUG ] No samples found: clusterflow [2022-02-07 19:50:24,653] multiqc [DEBUG ] No samples found: bcl2fastq [2022-02-07 19:50:24,663] multiqc [DEBUG ] No samples found: bclconvert [2022-02-07 19:50:24,697] multiqc [DEBUG ] No samples found: interop [2022-02-07 19:50:24,726] multiqc [DEBUG ] No samples found: ivar [2022-02-07 19:50:24,758] multiqc [DEBUG ] No samples found: flash [2022-02-07 19:50:24,768] multiqc [DEBUG ] No samples found: seqyclean [2022-02-07 19:50:24,777] multiqc [DEBUG ] No samples found: optitype [2022-02-07 19:50:24,826] multiqc [INFO ] Compressing plot data [2022-02-07 19:50:25,468] multiqc [INFO ] Report : multiqc_report.html [2022-02-07 19:50:25,468] multiqc [INFO ] Data : multiqc_data [2022-02-07 19:50:25,468] multiqc [DEBUG ] Moving data file from '/scratch/tmp1000qr7l/multiqc_data' to '/projectnb2/wax-dk/max/FIRKO/FIRKO/Scripts/14_final_summary/multiqc_report/multiqc_data' [2022-02-07 19:50:26,259] multiqc [INFO ] MultiQC complete