Sample total_passed total_failed secondary_passed secondary_failed supplementary_passed supplementary_failed duplicates_passed duplicates_failed mapped_passed mapped_failed mapped_passed_pct mapped_failed_pct paired in sequencing_passed paired in sequencing_failed read1_passed read1_failed read2_passed read2_failed properly paired_passed properly paired_failed properly paired_passed_pct properly paired_failed_pct with itself and mate mapped_passed with itself and mate mapped_failed singletons_passed singletons_failed singletons_passed_pct singletons_failed_pct with mate mapped to a different chr_passed with mate mapped to a different chr_failed with mate mapped to a different chr (mapQ >= 5)_passed with mate mapped to a different chr (mapQ >= 5)_failed flagstat_total G186_M10_statistics_for_all_accepted_reads 39306422 0 3300862 0 0 0 0 0 39306422 0 100.0 nan 36005560 0 18002780 0 18002780 0 36005560 0 100.0 nan 36005560 0 0 0 0.0 nan 0 0 0 0 39306422 G186_M10_statistics_for_primary_reads 36005560 0 0 0 0 0 0 0 36005560 0 100.0 nan 36005560 0 18002780 0 18002780 0 36005560 0 100.0 nan 36005560 0 0 0 0.0 nan 0 0 0 0 36005560 G186_M10_statistics_for_primary_unique_reads 34410606 0 0 0 0 0 0 0 34410606 0 100.0 nan 34410606 0 17205303 0 17205303 0 34410606 0 100.0 nan 34410606 0 0 0 0.0 nan 0 0 0 0 34410606 G186_M11_statistics_for_all_accepted_reads 39442570 0 3166628 0 0 0 0 0 39442570 0 100.0 nan 36275942 0 18137971 0 18137971 0 36275942 0 100.0 nan 36275942 0 0 0 0.0 nan 0 0 0 0 39442570 G186_M11_statistics_for_primary_reads 36275942 0 0 0 0 0 0 0 36275942 0 100.0 nan 36275942 0 18137971 0 18137971 0 36275942 0 100.0 nan 36275942 0 0 0 0.0 nan 0 0 0 0 36275942 G186_M11_statistics_for_primary_unique_reads 34684266 0 0 0 0 0 0 0 34684266 0 100.0 nan 34684266 0 17342133 0 17342133 0 34684266 0 100.0 nan 34684266 0 0 0 0.0 nan 0 0 0 0 34684266 G186_M12_statistics_for_all_accepted_reads 32001226 0 2499850 0 0 0 0 0 32001226 0 100.0 nan 29501376 0 14750688 0 14750688 0 29501376 0 100.0 nan 29501376 0 0 0 0.0 nan 0 0 0 0 32001226 G186_M12_statistics_for_primary_reads 29501376 0 0 0 0 0 0 0 29501376 0 100.0 nan 29501376 0 14750688 0 14750688 0 29501376 0 100.0 nan 29501376 0 0 0 0.0 nan 0 0 0 0 29501376 G186_M12_statistics_for_primary_unique_reads 28224942 0 0 0 0 0 0 0 28224942 0 100.0 nan 28224942 0 14112471 0 14112471 0 28224942 0 100.0 nan 28224942 0 0 0 0.0 nan 0 0 0 0 28224942 G186_M13_statistics_for_all_accepted_reads 32103380 0 2589392 0 0 0 0 0 32103380 0 100.0 nan 29513988 0 14756994 0 14756994 0 29513988 0 100.0 nan 29513988 0 0 0 0.0 nan 0 0 0 0 32103380 G186_M13_statistics_for_primary_reads 29513988 0 0 0 0 0 0 0 29513988 0 100.0 nan 29513988 0 14756994 0 14756994 0 29513988 0 100.0 nan 29513988 0 0 0 0.0 nan 0 0 0 0 29513988 G186_M13_statistics_for_primary_unique_reads 28192970 0 0 0 0 0 0 0 28192970 0 100.0 nan 28192970 0 14096485 0 14096485 0 28192970 0 100.0 nan 28192970 0 0 0 0.0 nan 0 0 0 0 28192970 G186_M14_statistics_for_all_accepted_reads 35100802 0 2545674 0 0 0 0 0 35100802 0 100.0 nan 32555128 0 16277564 0 16277564 0 32555128 0 100.0 nan 32555128 0 0 0 0.0 nan 0 0 0 0 35100802 G186_M14_statistics_for_primary_reads 32555128 0 0 0 0 0 0 0 32555128 0 100.0 nan 32555128 0 16277564 0 16277564 0 32555128 0 100.0 nan 32555128 0 0 0 0.0 nan 0 0 0 0 32555128 G186_M14_statistics_for_primary_unique_reads 31312446 0 0 0 0 0 0 0 31312446 0 100.0 nan 31312446 0 15656223 0 15656223 0 31312446 0 100.0 nan 31312446 0 0 0 0.0 nan 0 0 0 0 31312446 G186_M15_statistics_for_all_accepted_reads 35617128 0 3053416 0 0 0 0 0 35617128 0 100.0 nan 32563712 0 16281856 0 16281856 0 32563712 0 100.0 nan 32563712 0 0 0 0.0 nan 0 0 0 0 35617128 G186_M15_statistics_for_primary_reads 32563712 0 0 0 0 0 0 0 32563712 0 100.0 nan 32563712 0 16281856 0 16281856 0 32563712 0 100.0 nan 32563712 0 0 0 0.0 nan 0 0 0 0 32563712 G186_M15_statistics_for_primary_unique_reads 31191316 0 0 0 0 0 0 0 31191316 0 100.0 nan 31191316 0 15595658 0 15595658 0 31191316 0 100.0 nan 31191316 0 0 0 0.0 nan 0 0 0 0 31191316 G186_M16_statistics_for_all_accepted_reads 34322836 0 2648274 0 0 0 0 0 34322836 0 100.0 nan 31674562 0 15837281 0 15837281 0 31674562 0 100.0 nan 31674562 0 0 0 0.0 nan 0 0 0 0 34322836 G186_M16_statistics_for_primary_reads 31674562 0 0 0 0 0 0 0 31674562 0 100.0 nan 31674562 0 15837281 0 15837281 0 31674562 0 100.0 nan 31674562 0 0 0 0.0 nan 0 0 0 0 31674562 G186_M16_statistics_for_primary_unique_reads 30289282 0 0 0 0 0 0 0 30289282 0 100.0 nan 30289282 0 15144641 0 15144641 0 30289282 0 100.0 nan 30289282 0 0 0 0.0 nan 0 0 0 0 30289282 G186_M17_statistics_for_all_accepted_reads 40304284 0 3228144 0 0 0 0 0 40304284 0 100.0 nan 37076140 0 18538070 0 18538070 0 37076140 0 100.0 nan 37076140 0 0 0 0.0 nan 0 0 0 0 40304284 G186_M17_statistics_for_primary_reads 37076140 0 0 0 0 0 0 0 37076140 0 100.0 nan 37076140 0 18538070 0 18538070 0 37076140 0 100.0 nan 37076140 0 0 0 0.0 nan 0 0 0 0 37076140 G186_M17_statistics_for_primary_unique_reads 35497842 0 0 0 0 0 0 0 35497842 0 100.0 nan 35497842 0 17748921 0 17748921 0 35497842 0 100.0 nan 35497842 0 0 0 0.0 nan 0 0 0 0 35497842 G186_M18_statistics_for_all_accepted_reads 41103922 0 2623400 0 0 0 0 0 41103922 0 100.0 nan 38480522 0 19240261 0 19240261 0 38480522 0 100.0 nan 38480522 0 0 0 0.0 nan 0 0 0 0 41103922 G186_M18_statistics_for_primary_reads 38480522 0 0 0 0 0 0 0 38480522 0 100.0 nan 38480522 0 19240261 0 19240261 0 38480522 0 100.0 nan 38480522 0 0 0 0.0 nan 0 0 0 0 38480522 G186_M18_statistics_for_primary_unique_reads 37167206 0 0 0 0 0 0 0 37167206 0 100.0 nan 37167206 0 18583603 0 18583603 0 37167206 0 100.0 nan 37167206 0 0 0 0.0 nan 0 0 0 0 37167206 G186_M19_statistics_for_all_accepted_reads 36746330 0 2792896 0 0 0 0 0 36746330 0 100.0 nan 33953434 0 16976717 0 16976717 0 33953434 0 100.0 nan 33953434 0 0 0 0.0 nan 0 0 0 0 36746330 G186_M19_statistics_for_primary_reads 33953434 0 0 0 0 0 0 0 33953434 0 100.0 nan 33953434 0 16976717 0 16976717 0 33953434 0 100.0 nan 33953434 0 0 0 0.0 nan 0 0 0 0 33953434 G186_M19_statistics_for_primary_unique_reads 32544396 0 0 0 0 0 0 0 32544396 0 100.0 nan 32544396 0 16272198 0 16272198 0 32544396 0 100.0 nan 32544396 0 0 0 0.0 nan 0 0 0 0 32544396 G186_M1_statistics_for_all_accepted_reads 29270788 0 2618854 0 0 0 0 0 29270788 0 100.0 nan 26651934 0 13325967 0 13325967 0 26651934 0 100.0 nan 26651934 0 0 0 0.0 nan 0 0 0 0 29270788 G186_M1_statistics_for_primary_reads 26651934 0 0 0 0 0 0 0 26651934 0 100.0 nan 26651934 0 13325967 0 13325967 0 26651934 0 100.0 nan 26651934 0 0 0 0.0 nan 0 0 0 0 26651934 G186_M1_statistics_for_primary_unique_reads 25552160 0 0 0 0 0 0 0 25552160 0 100.0 nan 25552160 0 12776080 0 12776080 0 25552160 0 100.0 nan 25552160 0 0 0 0.0 nan 0 0 0 0 25552160 G186_M20_statistics_for_all_accepted_reads 33396812 0 2417260 0 0 0 0 0 33396812 0 100.0 nan 30979552 0 15489776 0 15489776 0 30979552 0 100.0 nan 30979552 0 0 0 0.0 nan 0 0 0 0 33396812 G186_M20_statistics_for_primary_reads 30979552 0 0 0 0 0 0 0 30979552 0 100.0 nan 30979552 0 15489776 0 15489776 0 30979552 0 100.0 nan 30979552 0 0 0 0.0 nan 0 0 0 0 30979552 G186_M20_statistics_for_primary_unique_reads 29736686 0 0 0 0 0 0 0 29736686 0 100.0 nan 29736686 0 14868343 0 14868343 0 29736686 0 100.0 nan 29736686 0 0 0 0.0 nan 0 0 0 0 29736686 G186_M21_statistics_for_all_accepted_reads 37778314 0 2742864 0 0 0 0 0 37778314 0 100.0 nan 35035450 0 17517725 0 17517725 0 35035450 0 100.0 nan 35035450 0 0 0 0.0 nan 0 0 0 0 37778314 G186_M21_statistics_for_primary_reads 35035450 0 0 0 0 0 0 0 35035450 0 100.0 nan 35035450 0 17517725 0 17517725 0 35035450 0 100.0 nan 35035450 0 0 0 0.0 nan 0 0 0 0 35035450 G186_M21_statistics_for_primary_unique_reads 33605564 0 0 0 0 0 0 0 33605564 0 100.0 nan 33605564 0 16802782 0 16802782 0 33605564 0 100.0 nan 33605564 0 0 0 0.0 nan 0 0 0 0 33605564 G186_M22_statistics_for_all_accepted_reads 39537358 0 3554110 0 0 0 0 0 39537358 0 100.0 nan 35983248 0 17991624 0 17991624 0 35983248 0 100.0 nan 35983248 0 0 0 0.0 nan 0 0 0 0 39537358 G186_M22_statistics_for_primary_reads 35983248 0 0 0 0 0 0 0 35983248 0 100.0 nan 35983248 0 17991624 0 17991624 0 35983248 0 100.0 nan 35983248 0 0 0 0.0 nan 0 0 0 0 35983248 G186_M22_statistics_for_primary_unique_reads 34061952 0 0 0 0 0 0 0 34061952 0 100.0 nan 34061952 0 17030976 0 17030976 0 34061952 0 100.0 nan 34061952 0 0 0 0.0 nan 0 0 0 0 34061952 G186_M23_statistics_for_all_accepted_reads 36856320 0 2881174 0 0 0 0 0 36856320 0 100.0 nan 33975146 0 16987573 0 16987573 0 33975146 0 100.0 nan 33975146 0 0 0 0.0 nan 0 0 0 0 36856320 G186_M23_statistics_for_primary_reads 33975146 0 0 0 0 0 0 0 33975146 0 100.0 nan 33975146 0 16987573 0 16987573 0 33975146 0 100.0 nan 33975146 0 0 0 0.0 nan 0 0 0 0 33975146 G186_M23_statistics_for_primary_unique_reads 32409194 0 0 0 0 0 0 0 32409194 0 100.0 nan 32409194 0 16204597 0 16204597 0 32409194 0 100.0 nan 32409194 0 0 0 0.0 nan 0 0 0 0 32409194 G186_M24_statistics_for_all_accepted_reads 33734778 0 3037550 0 0 0 0 0 33734778 0 100.0 nan 30697228 0 15348614 0 15348614 0 30697228 0 100.0 nan 30697228 0 0 0 0.0 nan 0 0 0 0 33734778 G186_M24_statistics_for_primary_reads 30697228 0 0 0 0 0 0 0 30697228 0 100.0 nan 30697228 0 15348614 0 15348614 0 30697228 0 100.0 nan 30697228 0 0 0 0.0 nan 0 0 0 0 30697228 G186_M24_statistics_for_primary_unique_reads 28835038 0 0 0 0 0 0 0 28835038 0 100.0 nan 28835038 0 14417519 0 14417519 0 28835038 0 100.0 nan 28835038 0 0 0 0.0 nan 0 0 0 0 28835038 G186_M25_statistics_for_all_accepted_reads 36741258 0 3276710 0 0 0 0 0 36741258 0 100.0 nan 33464548 0 16732274 0 16732274 0 33464548 0 100.0 nan 33464548 0 0 0 0.0 nan 0 0 0 0 36741258 G186_M25_statistics_for_primary_reads 33464548 0 0 0 0 0 0 0 33464548 0 100.0 nan 33464548 0 16732274 0 16732274 0 33464548 0 100.0 nan 33464548 0 0 0 0.0 nan 0 0 0 0 33464548 G186_M25_statistics_for_primary_unique_reads 31558750 0 0 0 0 0 0 0 31558750 0 100.0 nan 31558750 0 15779375 0 15779375 0 31558750 0 100.0 nan 31558750 0 0 0 0.0 nan 0 0 0 0 31558750 G186_M2_statistics_for_all_accepted_reads 31926078 0 3004210 0 0 0 0 0 31926078 0 100.0 nan 28921868 0 14460934 0 14460934 0 28921868 0 100.0 nan 28921868 0 0 0 0.0 nan 0 0 0 0 31926078 G186_M2_statistics_for_primary_reads 28921868 0 0 0 0 0 0 0 28921868 0 100.0 nan 28921868 0 14460934 0 14460934 0 28921868 0 100.0 nan 28921868 0 0 0 0.0 nan 0 0 0 0 28921868 G186_M2_statistics_for_primary_unique_reads 27659714 0 0 0 0 0 0 0 27659714 0 100.0 nan 27659714 0 13829857 0 13829857 0 27659714 0 100.0 nan 27659714 0 0 0 0.0 nan 0 0 0 0 27659714 G186_M3_statistics_for_all_accepted_reads 34773726 0 2752032 0 0 0 0 0 34773726 0 100.0 nan 32021694 0 16010847 0 16010847 0 32021694 0 100.0 nan 32021694 0 0 0 0.0 nan 0 0 0 0 34773726 G186_M3_statistics_for_primary_reads 32021694 0 0 0 0 0 0 0 32021694 0 100.0 nan 32021694 0 16010847 0 16010847 0 32021694 0 100.0 nan 32021694 0 0 0 0.0 nan 0 0 0 0 32021694 G186_M3_statistics_for_primary_unique_reads 30753718 0 0 0 0 0 0 0 30753718 0 100.0 nan 30753718 0 15376859 0 15376859 0 30753718 0 100.0 nan 30753718 0 0 0 0.0 nan 0 0 0 0 30753718 G186_M4_statistics_for_all_accepted_reads 33348582 0 2855352 0 0 0 0 0 33348582 0 100.0 nan 30493230 0 15246615 0 15246615 0 30493230 0 100.0 nan 30493230 0 0 0 0.0 nan 0 0 0 0 33348582 G186_M4_statistics_for_primary_reads 30493230 0 0 0 0 0 0 0 30493230 0 100.0 nan 30493230 0 15246615 0 15246615 0 30493230 0 100.0 nan 30493230 0 0 0 0.0 nan 0 0 0 0 30493230 G186_M4_statistics_for_primary_unique_reads 29246536 0 0 0 0 0 0 0 29246536 0 100.0 nan 29246536 0 14623268 0 14623268 0 29246536 0 100.0 nan 29246536 0 0 0 0.0 nan 0 0 0 0 29246536 G186_M5_statistics_for_all_accepted_reads 37610520 0 2318318 0 0 0 0 0 37610520 0 100.0 nan 35292202 0 17646101 0 17646101 0 35292202 0 100.0 nan 35292202 0 0 0 0.0 nan 0 0 0 0 37610520 G186_M5_statistics_for_primary_reads 35292202 0 0 0 0 0 0 0 35292202 0 100.0 nan 35292202 0 17646101 0 17646101 0 35292202 0 100.0 nan 35292202 0 0 0 0.0 nan 0 0 0 0 35292202 G186_M5_statistics_for_primary_unique_reads 34129956 0 0 0 0 0 0 0 34129956 0 100.0 nan 34129956 0 17064978 0 17064978 0 34129956 0 100.0 nan 34129956 0 0 0 0.0 nan 0 0 0 0 34129956 G186_M6_statistics_for_all_accepted_reads 37873932 0 2441714 0 0 0 0 0 37873932 0 100.0 nan 35432218 0 17716109 0 17716109 0 35432218 0 100.0 nan 35432218 0 0 0 0.0 nan 0 0 0 0 37873932 G186_M6_statistics_for_primary_reads 35432218 0 0 0 0 0 0 0 35432218 0 100.0 nan 35432218 0 17716109 0 17716109 0 35432218 0 100.0 nan 35432218 0 0 0 0.0 nan 0 0 0 0 35432218 G186_M6_statistics_for_primary_unique_reads 34217398 0 0 0 0 0 0 0 34217398 0 100.0 nan 34217398 0 17108699 0 17108699 0 34217398 0 100.0 nan 34217398 0 0 0 0.0 nan 0 0 0 0 34217398 G186_M7_statistics_for_all_accepted_reads 37611184 0 2190406 0 0 0 0 0 37611184 0 100.0 nan 35420778 0 17710389 0 17710389 0 35420778 0 100.0 nan 35420778 0 0 0 0.0 nan 0 0 0 0 37611184 G186_M7_statistics_for_primary_reads 35420778 0 0 0 0 0 0 0 35420778 0 100.0 nan 35420778 0 17710389 0 17710389 0 35420778 0 100.0 nan 35420778 0 0 0 0.0 nan 0 0 0 0 35420778 G186_M7_statistics_for_primary_unique_reads 34322546 0 0 0 0 0 0 0 34322546 0 100.0 nan 34322546 0 17161273 0 17161273 0 34322546 0 100.0 nan 34322546 0 0 0 0.0 nan 0 0 0 0 34322546 G186_M8_statistics_for_all_accepted_reads 38214854 0 2156836 0 0 0 0 0 38214854 0 100.0 nan 36058018 0 18029009 0 18029009 0 36058018 0 100.0 nan 36058018 0 0 0 0.0 nan 0 0 0 0 38214854 G186_M8_statistics_for_primary_reads 36058018 0 0 0 0 0 0 0 36058018 0 100.0 nan 36058018 0 18029009 0 18029009 0 36058018 0 100.0 nan 36058018 0 0 0 0.0 nan 0 0 0 0 36058018 G186_M8_statistics_for_primary_unique_reads 34961618 0 0 0 0 0 0 0 34961618 0 100.0 nan 34961618 0 17480809 0 17480809 0 34961618 0 100.0 nan 34961618 0 0 0 0.0 nan 0 0 0 0 34961618 G186_M9_statistics_for_all_accepted_reads 31844548 0 2338644 0 0 0 0 0 31844548 0 100.0 nan 29505904 0 14752952 0 14752952 0 29505904 0 100.0 nan 29505904 0 0 0 0.0 nan 0 0 0 0 31844548 G186_M9_statistics_for_primary_reads 29505904 0 0 0 0 0 0 0 29505904 0 100.0 nan 29505904 0 14752952 0 14752952 0 29505904 0 100.0 nan 29505904 0 0 0 0.0 nan 0 0 0 0 29505904 G186_M9_statistics_for_primary_unique_reads 28360946 0 0 0 0 0 0 0 28360946 0 100.0 nan 28360946 0 14180473 0 14180473 0 28360946 0 100.0 nan 28360946 0 0 0 0.0 nan 0 0 0 0 28360946 statistics_for_primary_unique_reads 34322546 0 0 0 0 0 0 0 34322546 0 100.0 nan 34322546 0 17161273 0 17161273 0 34322546 0 100.0 nan 34322546 0 0 0 0.0 nan 0 0 0 0 34322546