[2023-09-14 06:18:50,559] multiqc [DEBUG ] This is MultiQC v1.12 [2023-09-14 06:18:50,559] multiqc [DEBUG ] No MultiQC config found: /usr/lib/python3.8/site-packages/multiqc_config.yaml [2023-09-14 06:18:50,559] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2023-09-14 06:18:50,559] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2023-09-14 06:18:50,560] multiqc [DEBUG ] Loading config settings from: Scripts/multiqc_config.yaml [2023-09-14 06:18:50,561] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2023-09-14 06:18:50,561] multiqc [DEBUG ] Command used: /usr/bin/multiqc -o multiqc_report --no-ansi -c Scripts/multiqc_config.yaml ../../SAMPLES ../03_FASTQC ../06_CollectMetrics [2023-09-14 06:18:50,832] multiqc [WARNING] MultiQC Version v1.15 now available! [2023-09-14 06:18:50,833] multiqc [DEBUG ] Command : /usr/bin/multiqc -o multiqc_report --no-ansi -c Scripts/multiqc_config.yaml ../../SAMPLES ../03_FASTQC ../06_CollectMetrics [2023-09-14 06:18:50,833] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/SRP282531/Scripts/14_final_summary [2023-09-14 06:18:50,833] multiqc [DEBUG ] Template : default [2023-09-14 06:18:50,833] multiqc [DEBUG ] Running Python 3.8.1 (default, Dec 26 2019, 14:42:08) [GCC 9.2.0] [2023-09-14 06:18:50,834] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, pbmarkdup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, checkqc, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype, whatshap [2023-09-14 06:18:50,858] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmpssus5318 [2023-09-14 06:18:50,993] multiqc [INFO ] Search path : /projectnb/wax-dk/max/SRP282531/SAMPLES [2023-09-14 06:18:50,993] multiqc [INFO ] Search path : /projectnb/wax-dk/max/SRP282531/Scripts/03_FASTQC [2023-09-14 06:18:50,993] multiqc [INFO ] Search path : /projectnb/wax-dk/max/SRP282531/Scripts/06_CollectMetrics [2023-09-14 06:18:51,253] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR12649920_pass.fastq.gz [2023-09-14 06:18:51,375] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRP282F_M6_primary_unique.bam [2023-09-14 06:18:51,375] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRP282F_M6_primary_unique.bam.bai [2023-09-14 06:18:51,442] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282F_M6_featureCounts.out [2023-09-14 06:18:51,446] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRP282F_M6_featureCounts.out [2023-09-14 06:18:51,446] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282F_M6_featureCounts.out [2023-09-14 06:18:51,459] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: SRP282F_M6_featureCounts.out [2023-09-14 06:18:51,459] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRP282F_M6_featureCounts.out [2023-09-14 06:18:51,459] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282F_M6_featureCounts.out [2023-09-14 06:18:51,459] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRP282F_M6_featureCounts.out [2023-09-14 06:18:51,459] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRP282F_M6_featureCounts.out [2023-09-14 06:18:51,459] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRP282F_M6_featureCounts.out [2023-09-14 06:18:51,459] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRP282F_M6_featureCounts.out [2023-09-14 06:18:51,459] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRP282F_M6_featureCounts.out [2023-09-14 06:18:51,494] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: SRP282F_M6_featureCounts.out [2023-09-14 06:18:53,189] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRP282F_M6_featureCounts.out [2023-09-14 06:18:53,346] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282F_M6_featureCounts.out [2023-09-14 06:18:53,351] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRP282F_M6_featureCounts.out [2023-09-14 06:18:53,351] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282F_M6_featureCounts.out [2023-09-14 06:18:53,358] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: SRP282F_M6_featureCounts.out [2023-09-14 06:18:53,358] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRP282F_M6_featureCounts.out [2023-09-14 06:18:53,359] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282F_M6_featureCounts.out [2023-09-14 06:18:53,359] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRP282F_M6_featureCounts.out [2023-09-14 06:18:53,359] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRP282F_M6_featureCounts.out [2023-09-14 06:18:53,359] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRP282F_M6_featureCounts.out [2023-09-14 06:18:53,359] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRP282F_M6_featureCounts.out [2023-09-14 06:18:53,359] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRP282F_M6_featureCounts.out [2023-09-14 06:18:53,394] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: SRP282F_M6_featureCounts.out [2023-09-14 06:18:55,014] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRP282F_M6_featureCounts.out [2023-09-14 06:18:55,179] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR12649918_pass.fastq.gz [2023-09-14 06:18:55,299] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRP282F_M10_primary_unique.bam.bai [2023-09-14 06:18:55,340] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRP282F_M10_primary_unique.bam [2023-09-14 06:18:55,391] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282F_M10_featureCounts.out [2023-09-14 06:18:55,395] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRP282F_M10_featureCounts.out [2023-09-14 06:18:55,396] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282F_M10_featureCounts.out [2023-09-14 06:18:55,402] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: SRP282F_M10_featureCounts.out [2023-09-14 06:18:55,402] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRP282F_M10_featureCounts.out [2023-09-14 06:18:55,403] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282F_M10_featureCounts.out [2023-09-14 06:18:55,403] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRP282F_M10_featureCounts.out [2023-09-14 06:18:55,403] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRP282F_M10_featureCounts.out [2023-09-14 06:18:55,403] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRP282F_M10_featureCounts.out [2023-09-14 06:18:55,403] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRP282F_M10_featureCounts.out [2023-09-14 06:18:55,403] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRP282F_M10_featureCounts.out [2023-09-14 06:18:55,444] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: SRP282F_M10_featureCounts.out [2023-09-14 06:18:57,139] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRP282F_M10_featureCounts.out [2023-09-14 06:18:57,305] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282F_M10_featureCounts.out [2023-09-14 06:18:57,310] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRP282F_M10_featureCounts.out [2023-09-14 06:18:57,310] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282F_M10_featureCounts.out [2023-09-14 06:18:57,317] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: SRP282F_M10_featureCounts.out [2023-09-14 06:18:57,317] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRP282F_M10_featureCounts.out [2023-09-14 06:18:57,317] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282F_M10_featureCounts.out [2023-09-14 06:18:57,318] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRP282F_M10_featureCounts.out [2023-09-14 06:18:57,318] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRP282F_M10_featureCounts.out [2023-09-14 06:18:57,318] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRP282F_M10_featureCounts.out [2023-09-14 06:18:57,318] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRP282F_M10_featureCounts.out [2023-09-14 06:18:57,318] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRP282F_M10_featureCounts.out [2023-09-14 06:18:57,359] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: SRP282F_M10_featureCounts.out [2023-09-14 06:18:58,997] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRP282F_M10_featureCounts.out [2023-09-14 06:18:59,158] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR12649881_pass.fastq.gz [2023-09-14 06:18:59,213] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRP282F_M12_primary_unique.bam.bai [2023-09-14 06:18:59,295] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRP282F_M12_primary_unique.bam [2023-09-14 06:18:59,328] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282F_M12_featureCounts.out [2023-09-14 06:18:59,332] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRP282F_M12_featureCounts.out [2023-09-14 06:18:59,332] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282F_M12_featureCounts.out [2023-09-14 06:18:59,339] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: SRP282F_M12_featureCounts.out [2023-09-14 06:18:59,340] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRP282F_M12_featureCounts.out [2023-09-14 06:18:59,340] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282F_M12_featureCounts.out [2023-09-14 06:18:59,340] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRP282F_M12_featureCounts.out [2023-09-14 06:18:59,340] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRP282F_M12_featureCounts.out [2023-09-14 06:18:59,340] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRP282F_M12_featureCounts.out [2023-09-14 06:18:59,340] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRP282F_M12_featureCounts.out [2023-09-14 06:18:59,340] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRP282F_M12_featureCounts.out [2023-09-14 06:18:59,374] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: SRP282F_M12_featureCounts.out [2023-09-14 06:19:00,974] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRP282F_M12_featureCounts.out [2023-09-14 06:19:01,124] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282F_M12_featureCounts.out [2023-09-14 06:19:01,129] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRP282F_M12_featureCounts.out [2023-09-14 06:19:01,129] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282F_M12_featureCounts.out [2023-09-14 06:19:01,136] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: SRP282F_M12_featureCounts.out [2023-09-14 06:19:01,136] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRP282F_M12_featureCounts.out [2023-09-14 06:19:01,136] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282F_M12_featureCounts.out [2023-09-14 06:19:01,136] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRP282F_M12_featureCounts.out [2023-09-14 06:19:01,136] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRP282F_M12_featureCounts.out [2023-09-14 06:19:01,136] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRP282F_M12_featureCounts.out [2023-09-14 06:19:01,136] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRP282F_M12_featureCounts.out [2023-09-14 06:19:01,137] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRP282F_M12_featureCounts.out [2023-09-14 06:19:01,170] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: SRP282F_M12_featureCounts.out [2023-09-14 06:19:02,793] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRP282F_M12_featureCounts.out [2023-09-14 06:19:02,957] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR12649920_pass.fastq.gz [2023-09-14 06:19:02,981] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRP282_M6_primary_unique.bam.bai [2023-09-14 06:19:03,015] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRP282_M6_primary_unique.bam [2023-09-14 06:19:03,161] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282_M6_featureCounts.out [2023-09-14 06:19:03,165] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRP282_M6_featureCounts.out [2023-09-14 06:19:03,165] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282_M6_featureCounts.out [2023-09-14 06:19:03,171] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: SRP282_M6_featureCounts.out [2023-09-14 06:19:03,171] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRP282_M6_featureCounts.out [2023-09-14 06:19:03,172] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282_M6_featureCounts.out [2023-09-14 06:19:03,172] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRP282_M6_featureCounts.out [2023-09-14 06:19:03,172] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRP282_M6_featureCounts.out [2023-09-14 06:19:03,172] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRP282_M6_featureCounts.out [2023-09-14 06:19:03,172] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRP282_M6_featureCounts.out [2023-09-14 06:19:03,172] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRP282_M6_featureCounts.out [2023-09-14 06:19:03,204] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: SRP282_M6_featureCounts.out [2023-09-14 06:19:04,793] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRP282_M6_featureCounts.out [2023-09-14 06:19:04,971] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282_M6_featureCounts.out [2023-09-14 06:19:04,976] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRP282_M6_featureCounts.out [2023-09-14 06:19:04,977] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282_M6_featureCounts.out [2023-09-14 06:19:04,984] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: SRP282_M6_featureCounts.out [2023-09-14 06:19:04,985] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRP282_M6_featureCounts.out [2023-09-14 06:19:04,985] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282_M6_featureCounts.out [2023-09-14 06:19:04,985] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRP282_M6_featureCounts.out [2023-09-14 06:19:04,985] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRP282_M6_featureCounts.out [2023-09-14 06:19:04,986] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRP282_M6_featureCounts.out [2023-09-14 06:19:04,986] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRP282_M6_featureCounts.out [2023-09-14 06:19:04,986] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRP282_M6_featureCounts.out [2023-09-14 06:19:05,034] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: SRP282_M6_featureCounts.out [2023-09-14 06:19:06,669] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRP282_M6_featureCounts.out [2023-09-14 06:19:06,774] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282_M6_metrics [2023-09-14 06:19:06,779] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282_M6_metrics [2023-09-14 06:19:06,786] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282_M6_metrics [2023-09-14 06:19:06,840] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR12649880_pass.fastq.gz [2023-09-14 06:19:06,867] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRP282_M7_primary_unique.bam [2023-09-14 06:19:06,904] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRP282_M7_primary_unique.bam.bai [2023-09-14 06:19:07,065] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282_M7_featureCounts.out [2023-09-14 06:19:07,069] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRP282_M7_featureCounts.out [2023-09-14 06:19:07,070] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282_M7_featureCounts.out [2023-09-14 06:19:07,077] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: SRP282_M7_featureCounts.out [2023-09-14 06:19:07,077] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRP282_M7_featureCounts.out [2023-09-14 06:19:07,077] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282_M7_featureCounts.out [2023-09-14 06:19:07,077] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRP282_M7_featureCounts.out [2023-09-14 06:19:07,078] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRP282_M7_featureCounts.out [2023-09-14 06:19:07,078] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRP282_M7_featureCounts.out [2023-09-14 06:19:07,078] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRP282_M7_featureCounts.out [2023-09-14 06:19:07,078] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRP282_M7_featureCounts.out [2023-09-14 06:19:07,117] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: SRP282_M7_featureCounts.out [2023-09-14 06:19:08,708] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRP282_M7_featureCounts.out [2023-09-14 06:19:08,867] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282_M7_featureCounts.out [2023-09-14 06:19:08,871] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRP282_M7_featureCounts.out [2023-09-14 06:19:08,872] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282_M7_featureCounts.out [2023-09-14 06:19:08,878] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: SRP282_M7_featureCounts.out [2023-09-14 06:19:08,878] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRP282_M7_featureCounts.out [2023-09-14 06:19:08,878] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282_M7_featureCounts.out [2023-09-14 06:19:08,878] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRP282_M7_featureCounts.out [2023-09-14 06:19:08,878] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRP282_M7_featureCounts.out [2023-09-14 06:19:08,878] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRP282_M7_featureCounts.out [2023-09-14 06:19:08,878] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRP282_M7_featureCounts.out [2023-09-14 06:19:08,879] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRP282_M7_featureCounts.out [2023-09-14 06:19:08,918] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: SRP282_M7_featureCounts.out [2023-09-14 06:19:10,517] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRP282_M7_featureCounts.out [2023-09-14 06:19:10,616] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282_M7_metrics [2023-09-14 06:19:10,624] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282_M7_metrics [2023-09-14 06:19:10,631] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282_M7_metrics [2023-09-14 06:19:10,693] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR12649918_pass.fastq.gz [2023-09-14 06:19:10,781] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRP282_M10_primary_unique.bam.bai [2023-09-14 06:19:10,810] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRP282_M10_primary_unique.bam [2023-09-14 06:19:10,909] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282_M10_featureCounts.out [2023-09-14 06:19:10,914] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRP282_M10_featureCounts.out [2023-09-14 06:19:10,915] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282_M10_featureCounts.out [2023-09-14 06:19:10,923] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: SRP282_M10_featureCounts.out [2023-09-14 06:19:10,923] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRP282_M10_featureCounts.out [2023-09-14 06:19:10,924] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282_M10_featureCounts.out [2023-09-14 06:19:10,924] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRP282_M10_featureCounts.out [2023-09-14 06:19:10,924] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRP282_M10_featureCounts.out [2023-09-14 06:19:10,924] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRP282_M10_featureCounts.out [2023-09-14 06:19:10,924] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRP282_M10_featureCounts.out [2023-09-14 06:19:10,924] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRP282_M10_featureCounts.out [2023-09-14 06:19:10,964] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: SRP282_M10_featureCounts.out [2023-09-14 06:19:12,563] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRP282_M10_featureCounts.out [2023-09-14 06:19:12,723] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282_M10_featureCounts.out [2023-09-14 06:19:12,728] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRP282_M10_featureCounts.out [2023-09-14 06:19:12,728] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282_M10_featureCounts.out [2023-09-14 06:19:12,734] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: SRP282_M10_featureCounts.out [2023-09-14 06:19:12,734] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRP282_M10_featureCounts.out [2023-09-14 06:19:12,735] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282_M10_featureCounts.out [2023-09-14 06:19:12,735] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRP282_M10_featureCounts.out [2023-09-14 06:19:12,735] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRP282_M10_featureCounts.out [2023-09-14 06:19:12,735] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRP282_M10_featureCounts.out [2023-09-14 06:19:12,735] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRP282_M10_featureCounts.out [2023-09-14 06:19:12,735] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRP282_M10_featureCounts.out [2023-09-14 06:19:12,774] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: SRP282_M10_featureCounts.out [2023-09-14 06:19:14,364] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRP282_M10_featureCounts.out [2023-09-14 06:19:14,470] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282_M10_metrics [2023-09-14 06:19:14,473] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282_M10_metrics [2023-09-14 06:19:14,479] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282_M10_metrics [2023-09-14 06:19:14,530] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR12649883_pass.fastq.gz [2023-09-14 06:19:14,676] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRP282_M4_primary_unique.bam [2023-09-14 06:19:14,679] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRP282_M4_primary_unique.bam.bai [2023-09-14 06:19:14,709] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282_M4_featureCounts.out [2023-09-14 06:19:14,713] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRP282_M4_featureCounts.out [2023-09-14 06:19:14,714] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282_M4_featureCounts.out [2023-09-14 06:19:14,720] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: SRP282_M4_featureCounts.out [2023-09-14 06:19:14,720] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRP282_M4_featureCounts.out [2023-09-14 06:19:14,720] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282_M4_featureCounts.out [2023-09-14 06:19:14,721] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRP282_M4_featureCounts.out [2023-09-14 06:19:14,721] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRP282_M4_featureCounts.out [2023-09-14 06:19:14,721] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRP282_M4_featureCounts.out [2023-09-14 06:19:14,721] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRP282_M4_featureCounts.out [2023-09-14 06:19:14,721] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRP282_M4_featureCounts.out [2023-09-14 06:19:14,754] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: SRP282_M4_featureCounts.out [2023-09-14 06:19:16,371] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRP282_M4_featureCounts.out [2023-09-14 06:19:16,525] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282_M4_featureCounts.out [2023-09-14 06:19:16,530] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRP282_M4_featureCounts.out [2023-09-14 06:19:16,530] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282_M4_featureCounts.out [2023-09-14 06:19:16,536] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: SRP282_M4_featureCounts.out [2023-09-14 06:19:16,537] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRP282_M4_featureCounts.out [2023-09-14 06:19:16,537] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282_M4_featureCounts.out [2023-09-14 06:19:16,537] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRP282_M4_featureCounts.out [2023-09-14 06:19:16,537] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRP282_M4_featureCounts.out [2023-09-14 06:19:16,537] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRP282_M4_featureCounts.out [2023-09-14 06:19:16,537] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRP282_M4_featureCounts.out [2023-09-14 06:19:16,537] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRP282_M4_featureCounts.out [2023-09-14 06:19:16,570] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: SRP282_M4_featureCounts.out [2023-09-14 06:19:18,156] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRP282_M4_featureCounts.out [2023-09-14 06:19:18,290] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282_M4_metrics [2023-09-14 06:19:18,293] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282_M4_metrics [2023-09-14 06:19:18,299] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282_M4_metrics [2023-09-14 06:19:18,356] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR12649919_pass.fastq.gz [2023-09-14 06:19:18,358] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRP282_M9_primary_unique.bam.bai [2023-09-14 06:19:18,416] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRP282_M9_primary_unique.bam [2023-09-14 06:19:18,550] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282_M9_featureCounts.out [2023-09-14 06:19:18,555] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRP282_M9_featureCounts.out [2023-09-14 06:19:18,555] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282_M9_featureCounts.out [2023-09-14 06:19:18,562] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: SRP282_M9_featureCounts.out [2023-09-14 06:19:18,562] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRP282_M9_featureCounts.out [2023-09-14 06:19:18,562] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282_M9_featureCounts.out [2023-09-14 06:19:18,562] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRP282_M9_featureCounts.out [2023-09-14 06:19:18,562] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRP282_M9_featureCounts.out [2023-09-14 06:19:18,562] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRP282_M9_featureCounts.out [2023-09-14 06:19:18,562] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRP282_M9_featureCounts.out [2023-09-14 06:19:18,562] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRP282_M9_featureCounts.out [2023-09-14 06:19:18,601] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: SRP282_M9_featureCounts.out [2023-09-14 06:19:20,185] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRP282_M9_featureCounts.out [2023-09-14 06:19:20,340] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282_M9_featureCounts.out [2023-09-14 06:19:20,345] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRP282_M9_featureCounts.out [2023-09-14 06:19:20,345] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282_M9_featureCounts.out [2023-09-14 06:19:20,351] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: SRP282_M9_featureCounts.out [2023-09-14 06:19:20,351] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRP282_M9_featureCounts.out [2023-09-14 06:19:20,351] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282_M9_featureCounts.out [2023-09-14 06:19:20,352] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRP282_M9_featureCounts.out [2023-09-14 06:19:20,352] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRP282_M9_featureCounts.out [2023-09-14 06:19:20,352] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRP282_M9_featureCounts.out [2023-09-14 06:19:20,352] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRP282_M9_featureCounts.out [2023-09-14 06:19:20,352] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRP282_M9_featureCounts.out [2023-09-14 06:19:20,391] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: SRP282_M9_featureCounts.out [2023-09-14 06:19:22,005] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRP282_M9_featureCounts.out [2023-09-14 06:19:22,143] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282_M9_metrics [2023-09-14 06:19:22,146] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282_M9_metrics [2023-09-14 06:19:22,152] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282_M9_metrics [2023-09-14 06:19:22,209] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR12649879_pass.fastq.gz [2023-09-14 06:19:22,246] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRP282_M8_primary_unique.bam.bai [2023-09-14 06:19:22,338] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRP282_M8_primary_unique.bam [2023-09-14 06:19:22,411] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282_M8_featureCounts.out [2023-09-14 06:19:22,416] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRP282_M8_featureCounts.out [2023-09-14 06:19:22,416] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282_M8_featureCounts.out [2023-09-14 06:19:22,422] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: SRP282_M8_featureCounts.out [2023-09-14 06:19:22,422] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRP282_M8_featureCounts.out [2023-09-14 06:19:22,422] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282_M8_featureCounts.out [2023-09-14 06:19:22,422] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRP282_M8_featureCounts.out [2023-09-14 06:19:22,423] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRP282_M8_featureCounts.out [2023-09-14 06:19:22,423] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRP282_M8_featureCounts.out [2023-09-14 06:19:22,423] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRP282_M8_featureCounts.out [2023-09-14 06:19:22,423] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRP282_M8_featureCounts.out [2023-09-14 06:19:22,461] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: SRP282_M8_featureCounts.out [2023-09-14 06:19:24,058] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRP282_M8_featureCounts.out [2023-09-14 06:19:24,218] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282_M8_featureCounts.out [2023-09-14 06:19:24,223] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRP282_M8_featureCounts.out [2023-09-14 06:19:24,223] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282_M8_featureCounts.out [2023-09-14 06:19:24,234] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: SRP282_M8_featureCounts.out [2023-09-14 06:19:24,234] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRP282_M8_featureCounts.out [2023-09-14 06:19:24,234] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282_M8_featureCounts.out [2023-09-14 06:19:24,234] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRP282_M8_featureCounts.out [2023-09-14 06:19:24,235] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRP282_M8_featureCounts.out [2023-09-14 06:19:24,235] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRP282_M8_featureCounts.out [2023-09-14 06:19:24,235] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRP282_M8_featureCounts.out [2023-09-14 06:19:24,235] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRP282_M8_featureCounts.out [2023-09-14 06:19:24,269] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: SRP282_M8_featureCounts.out [2023-09-14 06:19:25,862] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRP282_M8_featureCounts.out [2023-09-14 06:19:25,993] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282_M8_metrics [2023-09-14 06:19:25,995] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282_M8_metrics [2023-09-14 06:19:26,000] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282_M8_metrics [2023-09-14 06:19:26,074] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR12649880_pass.fastq.gz [2023-09-14 06:19:26,194] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRP282F_M7_primary_unique.bam.bai [2023-09-14 06:19:26,220] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRP282F_M7_primary_unique.bam [2023-09-14 06:19:26,286] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282F_M7_featureCounts.out [2023-09-14 06:19:26,291] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRP282F_M7_featureCounts.out [2023-09-14 06:19:26,291] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282F_M7_featureCounts.out [2023-09-14 06:19:26,300] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: SRP282F_M7_featureCounts.out [2023-09-14 06:19:26,301] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRP282F_M7_featureCounts.out [2023-09-14 06:19:26,301] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282F_M7_featureCounts.out [2023-09-14 06:19:26,301] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRP282F_M7_featureCounts.out [2023-09-14 06:19:26,302] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRP282F_M7_featureCounts.out [2023-09-14 06:19:26,302] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRP282F_M7_featureCounts.out [2023-09-14 06:19:26,302] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRP282F_M7_featureCounts.out [2023-09-14 06:19:26,302] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRP282F_M7_featureCounts.out [2023-09-14 06:19:26,340] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: SRP282F_M7_featureCounts.out [2023-09-14 06:19:28,097] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRP282F_M7_featureCounts.out [2023-09-14 06:19:28,269] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282F_M7_featureCounts.out [2023-09-14 06:19:28,273] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRP282F_M7_featureCounts.out [2023-09-14 06:19:28,274] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282F_M7_featureCounts.out [2023-09-14 06:19:28,280] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: SRP282F_M7_featureCounts.out [2023-09-14 06:19:28,280] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRP282F_M7_featureCounts.out [2023-09-14 06:19:28,281] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282F_M7_featureCounts.out [2023-09-14 06:19:28,281] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRP282F_M7_featureCounts.out [2023-09-14 06:19:28,281] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRP282F_M7_featureCounts.out [2023-09-14 06:19:28,281] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRP282F_M7_featureCounts.out [2023-09-14 06:19:28,281] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRP282F_M7_featureCounts.out [2023-09-14 06:19:28,281] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRP282F_M7_featureCounts.out [2023-09-14 06:19:28,321] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: SRP282F_M7_featureCounts.out [2023-09-14 06:19:29,895] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRP282F_M7_featureCounts.out [2023-09-14 06:19:30,033] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR12649882_pass.fastq.gz [2023-09-14 06:19:30,126] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRP282_M11_primary_unique.bam.bai [2023-09-14 06:19:30,158] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRP282_M11_primary_unique.bam [2023-09-14 06:19:30,241] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282_M11_featureCounts.out [2023-09-14 06:19:30,245] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRP282_M11_featureCounts.out [2023-09-14 06:19:30,246] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282_M11_featureCounts.out [2023-09-14 06:19:30,251] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: SRP282_M11_featureCounts.out [2023-09-14 06:19:30,251] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRP282_M11_featureCounts.out [2023-09-14 06:19:30,251] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282_M11_featureCounts.out [2023-09-14 06:19:30,251] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRP282_M11_featureCounts.out [2023-09-14 06:19:30,251] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRP282_M11_featureCounts.out [2023-09-14 06:19:30,251] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRP282_M11_featureCounts.out [2023-09-14 06:19:30,252] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRP282_M11_featureCounts.out [2023-09-14 06:19:30,252] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRP282_M11_featureCounts.out [2023-09-14 06:19:30,290] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: SRP282_M11_featureCounts.out [2023-09-14 06:19:31,877] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRP282_M11_featureCounts.out [2023-09-14 06:19:32,037] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282_M11_featureCounts.out [2023-09-14 06:19:32,041] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRP282_M11_featureCounts.out [2023-09-14 06:19:32,041] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282_M11_featureCounts.out [2023-09-14 06:19:32,053] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: SRP282_M11_featureCounts.out [2023-09-14 06:19:32,053] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRP282_M11_featureCounts.out [2023-09-14 06:19:32,053] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282_M11_featureCounts.out [2023-09-14 06:19:32,053] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRP282_M11_featureCounts.out [2023-09-14 06:19:32,053] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRP282_M11_featureCounts.out [2023-09-14 06:19:32,053] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRP282_M11_featureCounts.out [2023-09-14 06:19:32,054] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRP282_M11_featureCounts.out [2023-09-14 06:19:32,054] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRP282_M11_featureCounts.out [2023-09-14 06:19:32,088] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: SRP282_M11_featureCounts.out [2023-09-14 06:19:33,672] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRP282_M11_featureCounts.out [2023-09-14 06:19:33,770] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282_M11_metrics [2023-09-14 06:19:33,778] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282_M11_metrics [2023-09-14 06:19:33,784] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282_M11_metrics [2023-09-14 06:19:33,845] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR12649909_pass.fastq.gz [2023-09-14 06:19:33,901] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRP282F_M1_primary_unique.bam.bai [2023-09-14 06:19:33,930] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRP282F_M1_primary_unique.bam [2023-09-14 06:19:34,019] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282F_M1_featureCounts.out [2023-09-14 06:19:34,024] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRP282F_M1_featureCounts.out [2023-09-14 06:19:34,024] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282F_M1_featureCounts.out [2023-09-14 06:19:34,031] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: SRP282F_M1_featureCounts.out [2023-09-14 06:19:34,031] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRP282F_M1_featureCounts.out [2023-09-14 06:19:34,031] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282F_M1_featureCounts.out [2023-09-14 06:19:34,031] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRP282F_M1_featureCounts.out [2023-09-14 06:19:34,031] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRP282F_M1_featureCounts.out [2023-09-14 06:19:34,031] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRP282F_M1_featureCounts.out [2023-09-14 06:19:34,031] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRP282F_M1_featureCounts.out [2023-09-14 06:19:34,031] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRP282F_M1_featureCounts.out [2023-09-14 06:19:34,065] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: SRP282F_M1_featureCounts.out [2023-09-14 06:19:35,647] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRP282F_M1_featureCounts.out [2023-09-14 06:19:35,805] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282F_M1_featureCounts.out [2023-09-14 06:19:35,809] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRP282F_M1_featureCounts.out [2023-09-14 06:19:35,810] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282F_M1_featureCounts.out [2023-09-14 06:19:35,816] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: SRP282F_M1_featureCounts.out [2023-09-14 06:19:35,816] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRP282F_M1_featureCounts.out [2023-09-14 06:19:35,816] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282F_M1_featureCounts.out [2023-09-14 06:19:35,816] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRP282F_M1_featureCounts.out [2023-09-14 06:19:35,816] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRP282F_M1_featureCounts.out [2023-09-14 06:19:35,816] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRP282F_M1_featureCounts.out [2023-09-14 06:19:35,816] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRP282F_M1_featureCounts.out [2023-09-14 06:19:35,817] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRP282F_M1_featureCounts.out [2023-09-14 06:19:35,850] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: SRP282F_M1_featureCounts.out [2023-09-14 06:19:37,445] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRP282F_M1_featureCounts.out [2023-09-14 06:19:37,612] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR12649883_pass.fastq.gz [2023-09-14 06:19:37,698] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRP282F_M4_primary_unique.bam.bai [2023-09-14 06:19:37,758] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRP282F_M4_primary_unique.bam [2023-09-14 06:19:37,786] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282F_M4_featureCounts.out [2023-09-14 06:19:37,790] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRP282F_M4_featureCounts.out [2023-09-14 06:19:37,790] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282F_M4_featureCounts.out [2023-09-14 06:19:37,796] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: SRP282F_M4_featureCounts.out [2023-09-14 06:19:37,796] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRP282F_M4_featureCounts.out [2023-09-14 06:19:37,796] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282F_M4_featureCounts.out [2023-09-14 06:19:37,796] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRP282F_M4_featureCounts.out [2023-09-14 06:19:37,796] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRP282F_M4_featureCounts.out [2023-09-14 06:19:37,796] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRP282F_M4_featureCounts.out [2023-09-14 06:19:37,796] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRP282F_M4_featureCounts.out [2023-09-14 06:19:37,796] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRP282F_M4_featureCounts.out [2023-09-14 06:19:37,829] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: SRP282F_M4_featureCounts.out [2023-09-14 06:19:39,407] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRP282F_M4_featureCounts.out [2023-09-14 06:19:39,570] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282F_M4_featureCounts.out [2023-09-14 06:19:39,574] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRP282F_M4_featureCounts.out [2023-09-14 06:19:39,575] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282F_M4_featureCounts.out [2023-09-14 06:19:39,581] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: SRP282F_M4_featureCounts.out [2023-09-14 06:19:39,581] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRP282F_M4_featureCounts.out [2023-09-14 06:19:39,581] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282F_M4_featureCounts.out [2023-09-14 06:19:39,581] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRP282F_M4_featureCounts.out [2023-09-14 06:19:39,581] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRP282F_M4_featureCounts.out [2023-09-14 06:19:39,581] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRP282F_M4_featureCounts.out [2023-09-14 06:19:39,581] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRP282F_M4_featureCounts.out [2023-09-14 06:19:39,581] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRP282F_M4_featureCounts.out [2023-09-14 06:19:39,613] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: SRP282F_M4_featureCounts.out [2023-09-14 06:19:41,192] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRP282F_M4_featureCounts.out [2023-09-14 06:19:41,367] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR12649879_pass.fastq.gz [2023-09-14 06:19:41,405] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRP282F_M8_primary_unique.bam [2023-09-14 06:19:41,405] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRP282F_M8_primary_unique.bam.bai [2023-09-14 06:19:41,533] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282F_M8_featureCounts.out [2023-09-14 06:19:41,537] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRP282F_M8_featureCounts.out [2023-09-14 06:19:41,537] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282F_M8_featureCounts.out [2023-09-14 06:19:41,543] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: SRP282F_M8_featureCounts.out [2023-09-14 06:19:41,543] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRP282F_M8_featureCounts.out [2023-09-14 06:19:41,543] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282F_M8_featureCounts.out [2023-09-14 06:19:41,544] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRP282F_M8_featureCounts.out [2023-09-14 06:19:41,544] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRP282F_M8_featureCounts.out [2023-09-14 06:19:41,544] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRP282F_M8_featureCounts.out [2023-09-14 06:19:41,544] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRP282F_M8_featureCounts.out [2023-09-14 06:19:41,544] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRP282F_M8_featureCounts.out [2023-09-14 06:19:41,577] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: SRP282F_M8_featureCounts.out [2023-09-14 06:19:43,322] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRP282F_M8_featureCounts.out [2023-09-14 06:19:43,480] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282F_M8_featureCounts.out [2023-09-14 06:19:43,484] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRP282F_M8_featureCounts.out [2023-09-14 06:19:43,485] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282F_M8_featureCounts.out [2023-09-14 06:19:43,490] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: SRP282F_M8_featureCounts.out [2023-09-14 06:19:43,491] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRP282F_M8_featureCounts.out [2023-09-14 06:19:43,491] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282F_M8_featureCounts.out [2023-09-14 06:19:43,491] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRP282F_M8_featureCounts.out [2023-09-14 06:19:43,491] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRP282F_M8_featureCounts.out [2023-09-14 06:19:43,491] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRP282F_M8_featureCounts.out [2023-09-14 06:19:43,491] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRP282F_M8_featureCounts.out [2023-09-14 06:19:43,491] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRP282F_M8_featureCounts.out [2023-09-14 06:19:43,525] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: SRP282F_M8_featureCounts.out [2023-09-14 06:19:45,249] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRP282F_M8_featureCounts.out [2023-09-14 06:19:45,384] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR12649898_pass.fastq.gz [2023-09-14 06:19:45,438] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRP282F_M2_primary_unique.bam [2023-09-14 06:19:45,460] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRP282F_M2_primary_unique.bam.bai [2023-09-14 06:19:45,565] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282F_M2_featureCounts.out [2023-09-14 06:19:45,569] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRP282F_M2_featureCounts.out [2023-09-14 06:19:45,570] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282F_M2_featureCounts.out [2023-09-14 06:19:45,576] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: SRP282F_M2_featureCounts.out [2023-09-14 06:19:45,576] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRP282F_M2_featureCounts.out [2023-09-14 06:19:45,576] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282F_M2_featureCounts.out [2023-09-14 06:19:45,576] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRP282F_M2_featureCounts.out [2023-09-14 06:19:45,576] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRP282F_M2_featureCounts.out [2023-09-14 06:19:45,577] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRP282F_M2_featureCounts.out [2023-09-14 06:19:45,577] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRP282F_M2_featureCounts.out [2023-09-14 06:19:45,577] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRP282F_M2_featureCounts.out [2023-09-14 06:19:45,615] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: SRP282F_M2_featureCounts.out [2023-09-14 06:19:47,216] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRP282F_M2_featureCounts.out [2023-09-14 06:19:47,368] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282F_M2_featureCounts.out [2023-09-14 06:19:47,373] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRP282F_M2_featureCounts.out [2023-09-14 06:19:47,373] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282F_M2_featureCounts.out [2023-09-14 06:19:47,379] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: SRP282F_M2_featureCounts.out [2023-09-14 06:19:47,379] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRP282F_M2_featureCounts.out [2023-09-14 06:19:47,379] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282F_M2_featureCounts.out [2023-09-14 06:19:47,379] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRP282F_M2_featureCounts.out [2023-09-14 06:19:47,379] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRP282F_M2_featureCounts.out [2023-09-14 06:19:47,379] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRP282F_M2_featureCounts.out [2023-09-14 06:19:47,379] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRP282F_M2_featureCounts.out [2023-09-14 06:19:47,380] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRP282F_M2_featureCounts.out [2023-09-14 06:19:47,413] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: SRP282F_M2_featureCounts.out [2023-09-14 06:19:48,996] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRP282F_M2_featureCounts.out [2023-09-14 06:19:49,147] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR12649921_pass.fastq.gz [2023-09-14 06:19:49,237] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRP282F_M5_primary_unique.bam.bai [2023-09-14 06:19:49,263] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRP282F_M5_primary_unique.bam [2023-09-14 06:19:49,347] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282F_M5_featureCounts.out [2023-09-14 06:19:49,351] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRP282F_M5_featureCounts.out [2023-09-14 06:19:49,352] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282F_M5_featureCounts.out [2023-09-14 06:19:49,357] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: SRP282F_M5_featureCounts.out [2023-09-14 06:19:49,357] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRP282F_M5_featureCounts.out [2023-09-14 06:19:49,358] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282F_M5_featureCounts.out [2023-09-14 06:19:49,358] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRP282F_M5_featureCounts.out [2023-09-14 06:19:49,358] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRP282F_M5_featureCounts.out [2023-09-14 06:19:49,358] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRP282F_M5_featureCounts.out [2023-09-14 06:19:49,358] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRP282F_M5_featureCounts.out [2023-09-14 06:19:49,358] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRP282F_M5_featureCounts.out [2023-09-14 06:19:49,391] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: SRP282F_M5_featureCounts.out [2023-09-14 06:19:50,982] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRP282F_M5_featureCounts.out [2023-09-14 06:19:51,156] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282F_M5_featureCounts.out [2023-09-14 06:19:51,160] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRP282F_M5_featureCounts.out [2023-09-14 06:19:51,160] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282F_M5_featureCounts.out [2023-09-14 06:19:51,167] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: SRP282F_M5_featureCounts.out [2023-09-14 06:19:51,167] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRP282F_M5_featureCounts.out [2023-09-14 06:19:51,167] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282F_M5_featureCounts.out [2023-09-14 06:19:51,167] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRP282F_M5_featureCounts.out [2023-09-14 06:19:51,168] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRP282F_M5_featureCounts.out [2023-09-14 06:19:51,168] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRP282F_M5_featureCounts.out [2023-09-14 06:19:51,168] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRP282F_M5_featureCounts.out [2023-09-14 06:19:51,168] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRP282F_M5_featureCounts.out [2023-09-14 06:19:51,209] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: SRP282F_M5_featureCounts.out [2023-09-14 06:19:52,805] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRP282F_M5_featureCounts.out [2023-09-14 06:19:52,973] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR12649887_pass.fastq.gz [2023-09-14 06:19:53,087] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRP282F_M3_primary_unique.bam [2023-09-14 06:19:53,120] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRP282F_M3_primary_unique.bam.bai [2023-09-14 06:19:53,153] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282F_M3_featureCounts.out [2023-09-14 06:19:53,157] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRP282F_M3_featureCounts.out [2023-09-14 06:19:53,157] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282F_M3_featureCounts.out [2023-09-14 06:19:53,164] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: SRP282F_M3_featureCounts.out [2023-09-14 06:19:53,164] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRP282F_M3_featureCounts.out [2023-09-14 06:19:53,164] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282F_M3_featureCounts.out [2023-09-14 06:19:53,164] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRP282F_M3_featureCounts.out [2023-09-14 06:19:53,164] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRP282F_M3_featureCounts.out [2023-09-14 06:19:53,165] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRP282F_M3_featureCounts.out [2023-09-14 06:19:53,165] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRP282F_M3_featureCounts.out [2023-09-14 06:19:53,165] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRP282F_M3_featureCounts.out [2023-09-14 06:19:53,196] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: SRP282F_M3_featureCounts.out [2023-09-14 06:19:54,782] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRP282F_M3_featureCounts.out [2023-09-14 06:19:54,933] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282F_M3_featureCounts.out [2023-09-14 06:19:54,938] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRP282F_M3_featureCounts.out [2023-09-14 06:19:54,938] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282F_M3_featureCounts.out [2023-09-14 06:19:54,945] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: SRP282F_M3_featureCounts.out [2023-09-14 06:19:54,946] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRP282F_M3_featureCounts.out [2023-09-14 06:19:54,946] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282F_M3_featureCounts.out [2023-09-14 06:19:54,946] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRP282F_M3_featureCounts.out [2023-09-14 06:19:54,946] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRP282F_M3_featureCounts.out [2023-09-14 06:19:54,946] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRP282F_M3_featureCounts.out [2023-09-14 06:19:54,946] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRP282F_M3_featureCounts.out [2023-09-14 06:19:54,946] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRP282F_M3_featureCounts.out [2023-09-14 06:19:54,984] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: SRP282F_M3_featureCounts.out [2023-09-14 06:19:56,582] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRP282F_M3_featureCounts.out [2023-09-14 06:19:56,752] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR12649909_pass.fastq.gz [2023-09-14 06:19:56,789] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRP282_M1_primary_unique.bam [2023-09-14 06:19:56,790] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRP282_M1_primary_unique.bam.bai [2023-09-14 06:19:56,936] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282_M1_featureCounts.out [2023-09-14 06:19:56,939] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRP282_M1_featureCounts.out [2023-09-14 06:19:56,940] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282_M1_featureCounts.out [2023-09-14 06:19:56,945] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: SRP282_M1_featureCounts.out [2023-09-14 06:19:56,946] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRP282_M1_featureCounts.out [2023-09-14 06:19:56,946] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282_M1_featureCounts.out [2023-09-14 06:19:56,946] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRP282_M1_featureCounts.out [2023-09-14 06:19:56,946] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRP282_M1_featureCounts.out [2023-09-14 06:19:56,946] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRP282_M1_featureCounts.out [2023-09-14 06:19:56,946] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRP282_M1_featureCounts.out [2023-09-14 06:19:56,946] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRP282_M1_featureCounts.out [2023-09-14 06:19:56,979] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: SRP282_M1_featureCounts.out [2023-09-14 06:19:58,580] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRP282_M1_featureCounts.out [2023-09-14 06:19:58,733] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282_M1_featureCounts.out [2023-09-14 06:19:58,737] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRP282_M1_featureCounts.out [2023-09-14 06:19:58,737] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282_M1_featureCounts.out [2023-09-14 06:19:58,743] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: SRP282_M1_featureCounts.out [2023-09-14 06:19:58,743] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRP282_M1_featureCounts.out [2023-09-14 06:19:58,743] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282_M1_featureCounts.out [2023-09-14 06:19:58,743] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRP282_M1_featureCounts.out [2023-09-14 06:19:58,744] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRP282_M1_featureCounts.out [2023-09-14 06:19:58,744] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRP282_M1_featureCounts.out [2023-09-14 06:19:58,744] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRP282_M1_featureCounts.out [2023-09-14 06:19:58,744] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRP282_M1_featureCounts.out [2023-09-14 06:19:58,776] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: SRP282_M1_featureCounts.out [2023-09-14 06:20:00,380] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRP282_M1_featureCounts.out [2023-09-14 06:20:00,515] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282_M1_metrics [2023-09-14 06:20:00,519] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282_M1_metrics [2023-09-14 06:20:00,524] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282_M1_metrics [2023-09-14 06:20:00,584] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR12649919_pass.fastq.gz [2023-09-14 06:20:00,584] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRP282F_M9_primary_unique.bam [2023-09-14 06:20:00,664] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRP282F_M9_primary_unique.bam.bai [2023-09-14 06:20:00,746] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282F_M9_featureCounts.out [2023-09-14 06:20:00,750] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRP282F_M9_featureCounts.out [2023-09-14 06:20:00,751] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282F_M9_featureCounts.out [2023-09-14 06:20:00,757] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: SRP282F_M9_featureCounts.out [2023-09-14 06:20:00,758] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRP282F_M9_featureCounts.out [2023-09-14 06:20:00,758] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282F_M9_featureCounts.out [2023-09-14 06:20:00,758] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRP282F_M9_featureCounts.out [2023-09-14 06:20:00,758] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRP282F_M9_featureCounts.out [2023-09-14 06:20:00,758] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRP282F_M9_featureCounts.out [2023-09-14 06:20:00,758] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRP282F_M9_featureCounts.out [2023-09-14 06:20:00,758] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRP282F_M9_featureCounts.out [2023-09-14 06:20:00,797] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: SRP282F_M9_featureCounts.out [2023-09-14 06:20:02,401] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRP282F_M9_featureCounts.out [2023-09-14 06:20:02,557] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282F_M9_featureCounts.out [2023-09-14 06:20:02,561] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRP282F_M9_featureCounts.out [2023-09-14 06:20:02,562] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282F_M9_featureCounts.out [2023-09-14 06:20:02,568] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: SRP282F_M9_featureCounts.out [2023-09-14 06:20:02,568] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRP282F_M9_featureCounts.out [2023-09-14 06:20:02,568] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282F_M9_featureCounts.out [2023-09-14 06:20:02,568] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRP282F_M9_featureCounts.out [2023-09-14 06:20:02,568] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRP282F_M9_featureCounts.out [2023-09-14 06:20:02,568] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRP282F_M9_featureCounts.out [2023-09-14 06:20:02,568] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRP282F_M9_featureCounts.out [2023-09-14 06:20:02,568] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRP282F_M9_featureCounts.out [2023-09-14 06:20:02,601] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: SRP282F_M9_featureCounts.out [2023-09-14 06:20:04,180] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRP282F_M9_featureCounts.out [2023-09-14 06:20:04,342] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR12649921_pass.fastq.gz [2023-09-14 06:20:04,403] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRP282_M5_primary_unique.bam.bai [2023-09-14 06:20:04,433] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRP282_M5_primary_unique.bam [2023-09-14 06:20:04,548] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282_M5_featureCounts.out [2023-09-14 06:20:04,552] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRP282_M5_featureCounts.out [2023-09-14 06:20:04,553] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282_M5_featureCounts.out [2023-09-14 06:20:04,559] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: SRP282_M5_featureCounts.out [2023-09-14 06:20:04,559] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRP282_M5_featureCounts.out [2023-09-14 06:20:04,560] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282_M5_featureCounts.out [2023-09-14 06:20:04,560] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRP282_M5_featureCounts.out [2023-09-14 06:20:04,560] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRP282_M5_featureCounts.out [2023-09-14 06:20:04,560] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRP282_M5_featureCounts.out [2023-09-14 06:20:04,560] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRP282_M5_featureCounts.out [2023-09-14 06:20:04,560] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRP282_M5_featureCounts.out [2023-09-14 06:20:04,592] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: SRP282_M5_featureCounts.out [2023-09-14 06:20:06,197] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRP282_M5_featureCounts.out [2023-09-14 06:20:06,369] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282_M5_featureCounts.out [2023-09-14 06:20:06,374] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRP282_M5_featureCounts.out [2023-09-14 06:20:06,375] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282_M5_featureCounts.out [2023-09-14 06:20:06,382] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: SRP282_M5_featureCounts.out [2023-09-14 06:20:06,382] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRP282_M5_featureCounts.out [2023-09-14 06:20:06,382] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282_M5_featureCounts.out [2023-09-14 06:20:06,382] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRP282_M5_featureCounts.out [2023-09-14 06:20:06,382] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRP282_M5_featureCounts.out [2023-09-14 06:20:06,382] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRP282_M5_featureCounts.out [2023-09-14 06:20:06,382] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRP282_M5_featureCounts.out [2023-09-14 06:20:06,382] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRP282_M5_featureCounts.out [2023-09-14 06:20:06,425] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: SRP282_M5_featureCounts.out [2023-09-14 06:20:08,178] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRP282_M5_featureCounts.out [2023-09-14 06:20:08,297] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282_M5_metrics [2023-09-14 06:20:08,303] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282_M5_metrics [2023-09-14 06:20:08,312] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282_M5_metrics [2023-09-14 06:20:08,375] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR12649887_pass.fastq.gz [2023-09-14 06:20:08,463] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRP282_M3_primary_unique.bam.bai [2023-09-14 06:20:08,464] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRP282_M3_primary_unique.bam [2023-09-14 06:20:08,553] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282_M3_featureCounts.out [2023-09-14 06:20:08,557] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRP282_M3_featureCounts.out [2023-09-14 06:20:08,557] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282_M3_featureCounts.out [2023-09-14 06:20:08,564] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: SRP282_M3_featureCounts.out [2023-09-14 06:20:08,564] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRP282_M3_featureCounts.out [2023-09-14 06:20:08,565] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282_M3_featureCounts.out [2023-09-14 06:20:08,565] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRP282_M3_featureCounts.out [2023-09-14 06:20:08,565] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRP282_M3_featureCounts.out [2023-09-14 06:20:08,565] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRP282_M3_featureCounts.out [2023-09-14 06:20:08,565] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRP282_M3_featureCounts.out [2023-09-14 06:20:08,565] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRP282_M3_featureCounts.out [2023-09-14 06:20:08,597] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: SRP282_M3_featureCounts.out [2023-09-14 06:20:10,184] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRP282_M3_featureCounts.out [2023-09-14 06:20:10,340] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282_M3_featureCounts.out [2023-09-14 06:20:10,343] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRP282_M3_featureCounts.out [2023-09-14 06:20:10,344] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282_M3_featureCounts.out [2023-09-14 06:20:10,351] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: SRP282_M3_featureCounts.out [2023-09-14 06:20:10,351] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRP282_M3_featureCounts.out [2023-09-14 06:20:10,351] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282_M3_featureCounts.out [2023-09-14 06:20:10,351] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRP282_M3_featureCounts.out [2023-09-14 06:20:10,352] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRP282_M3_featureCounts.out [2023-09-14 06:20:10,352] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRP282_M3_featureCounts.out [2023-09-14 06:20:10,352] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRP282_M3_featureCounts.out [2023-09-14 06:20:10,352] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRP282_M3_featureCounts.out [2023-09-14 06:20:10,384] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: SRP282_M3_featureCounts.out [2023-09-14 06:20:12,005] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRP282_M3_featureCounts.out [2023-09-14 06:20:12,140] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282_M3_metrics [2023-09-14 06:20:12,145] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282_M3_metrics [2023-09-14 06:20:12,153] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282_M3_metrics [2023-09-14 06:20:12,223] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR12649898_pass.fastq.gz [2023-09-14 06:20:12,251] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRP282_M2_primary_unique.bam [2023-09-14 06:20:12,287] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRP282_M2_primary_unique.bam.bai [2023-09-14 06:20:12,435] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282_M2_featureCounts.out [2023-09-14 06:20:12,440] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRP282_M2_featureCounts.out [2023-09-14 06:20:12,440] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282_M2_featureCounts.out [2023-09-14 06:20:12,446] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: SRP282_M2_featureCounts.out [2023-09-14 06:20:12,447] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRP282_M2_featureCounts.out [2023-09-14 06:20:12,447] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282_M2_featureCounts.out [2023-09-14 06:20:12,447] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRP282_M2_featureCounts.out [2023-09-14 06:20:12,447] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRP282_M2_featureCounts.out [2023-09-14 06:20:12,447] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRP282_M2_featureCounts.out [2023-09-14 06:20:12,447] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRP282_M2_featureCounts.out [2023-09-14 06:20:12,447] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRP282_M2_featureCounts.out [2023-09-14 06:20:12,481] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: SRP282_M2_featureCounts.out [2023-09-14 06:20:14,092] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRP282_M2_featureCounts.out [2023-09-14 06:20:14,249] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282_M2_featureCounts.out [2023-09-14 06:20:14,254] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRP282_M2_featureCounts.out [2023-09-14 06:20:14,254] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282_M2_featureCounts.out [2023-09-14 06:20:14,261] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: SRP282_M2_featureCounts.out [2023-09-14 06:20:14,261] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRP282_M2_featureCounts.out [2023-09-14 06:20:14,261] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282_M2_featureCounts.out [2023-09-14 06:20:14,261] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRP282_M2_featureCounts.out [2023-09-14 06:20:14,261] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRP282_M2_featureCounts.out [2023-09-14 06:20:14,261] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRP282_M2_featureCounts.out [2023-09-14 06:20:14,261] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRP282_M2_featureCounts.out [2023-09-14 06:20:14,262] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRP282_M2_featureCounts.out [2023-09-14 06:20:14,294] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: SRP282_M2_featureCounts.out [2023-09-14 06:20:15,897] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRP282_M2_featureCounts.out [2023-09-14 06:20:16,002] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282_M2_metrics [2023-09-14 06:20:16,005] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282_M2_metrics [2023-09-14 06:20:16,010] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282_M2_metrics [2023-09-14 06:20:16,077] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR12649881_pass.fastq.gz [2023-09-14 06:20:16,105] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRP282_M12_primary_unique.bam [2023-09-14 06:20:16,106] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRP282_M12_primary_unique.bam.bai [2023-09-14 06:20:16,282] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282_M12_featureCounts.out [2023-09-14 06:20:16,287] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRP282_M12_featureCounts.out [2023-09-14 06:20:16,287] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282_M12_featureCounts.out [2023-09-14 06:20:16,296] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: SRP282_M12_featureCounts.out [2023-09-14 06:20:16,297] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRP282_M12_featureCounts.out [2023-09-14 06:20:16,297] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282_M12_featureCounts.out [2023-09-14 06:20:16,297] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRP282_M12_featureCounts.out [2023-09-14 06:20:16,297] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRP282_M12_featureCounts.out [2023-09-14 06:20:16,297] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRP282_M12_featureCounts.out [2023-09-14 06:20:16,298] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRP282_M12_featureCounts.out [2023-09-14 06:20:16,298] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRP282_M12_featureCounts.out [2023-09-14 06:20:16,341] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: SRP282_M12_featureCounts.out [2023-09-14 06:20:18,036] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRP282_M12_featureCounts.out [2023-09-14 06:20:18,189] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282_M12_featureCounts.out [2023-09-14 06:20:18,193] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRP282_M12_featureCounts.out [2023-09-14 06:20:18,193] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282_M12_featureCounts.out [2023-09-14 06:20:18,201] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: SRP282_M12_featureCounts.out [2023-09-14 06:20:18,201] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRP282_M12_featureCounts.out [2023-09-14 06:20:18,201] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282_M12_featureCounts.out [2023-09-14 06:20:18,201] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRP282_M12_featureCounts.out [2023-09-14 06:20:18,201] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRP282_M12_featureCounts.out [2023-09-14 06:20:18,201] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRP282_M12_featureCounts.out [2023-09-14 06:20:18,201] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRP282_M12_featureCounts.out [2023-09-14 06:20:18,201] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRP282_M12_featureCounts.out [2023-09-14 06:20:18,234] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: SRP282_M12_featureCounts.out [2023-09-14 06:20:19,885] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRP282_M12_featureCounts.out [2023-09-14 06:20:19,992] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282_M12_metrics [2023-09-14 06:20:19,996] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282_M12_metrics [2023-09-14 06:20:20,003] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282_M12_metrics [2023-09-14 06:20:20,065] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR12649882_pass.fastq.gz [2023-09-14 06:20:20,174] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRP282F_M11_primary_unique.bam [2023-09-14 06:20:20,174] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRP282F_M11_primary_unique.bam.bai [2023-09-14 06:20:20,224] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282F_M11_featureCounts.out [2023-09-14 06:20:20,229] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRP282F_M11_featureCounts.out [2023-09-14 06:20:20,229] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282F_M11_featureCounts.out [2023-09-14 06:20:20,234] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: SRP282F_M11_featureCounts.out [2023-09-14 06:20:20,234] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRP282F_M11_featureCounts.out [2023-09-14 06:20:20,234] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282F_M11_featureCounts.out [2023-09-14 06:20:20,234] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRP282F_M11_featureCounts.out [2023-09-14 06:20:20,234] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRP282F_M11_featureCounts.out [2023-09-14 06:20:20,234] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRP282F_M11_featureCounts.out [2023-09-14 06:20:20,234] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRP282F_M11_featureCounts.out [2023-09-14 06:20:20,235] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRP282F_M11_featureCounts.out [2023-09-14 06:20:20,268] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: SRP282F_M11_featureCounts.out [2023-09-14 06:20:21,899] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRP282F_M11_featureCounts.out [2023-09-14 06:20:22,051] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRP282F_M11_featureCounts.out [2023-09-14 06:20:22,056] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRP282F_M11_featureCounts.out [2023-09-14 06:20:22,056] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRP282F_M11_featureCounts.out [2023-09-14 06:20:22,062] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: SRP282F_M11_featureCounts.out [2023-09-14 06:20:22,062] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRP282F_M11_featureCounts.out [2023-09-14 06:20:22,062] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRP282F_M11_featureCounts.out [2023-09-14 06:20:22,062] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRP282F_M11_featureCounts.out [2023-09-14 06:20:22,062] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRP282F_M11_featureCounts.out [2023-09-14 06:20:22,062] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRP282F_M11_featureCounts.out [2023-09-14 06:20:22,062] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRP282F_M11_featureCounts.out [2023-09-14 06:20:22,062] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRP282F_M11_featureCounts.out [2023-09-14 06:20:22,101] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: SRP282F_M11_featureCounts.out [2023-09-14 06:20:23,714] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRP282F_M11_featureCounts.out [2023-09-14 06:20:23,896] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-09-14 06:20:23,900] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-09-14 06:20:23,906] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-09-14 06:20:23,938] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: 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[2023-09-14 06:20:24,219] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_SRP282_M9.o832430 [2023-09-14 06:20:24,222] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_SRP282_M9.o832430 [2023-09-14 06:20:24,230] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_SRP282_M9.o832430 [2023-09-14 06:20:24,254] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_SRP282_M2.o832423 [2023-09-14 06:20:24,258] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_SRP282_M2.o832423 [2023-09-14 06:20:24,263] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_SRP282_M2.o832423 [2023-09-14 06:20:24,280] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern 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06:20:25,028] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRR12649909_pass_fastqc.html [2023-09-14 06:20:25,070] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRR12649919_pass_fastqc.html [2023-09-14 06:20:25,074] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRR12649919_pass_fastqc.html [2023-09-14 06:20:25,075] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRR12649919_pass_fastqc.html [2023-09-14 06:20:25,082] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRR12649919_pass_fastqc.html [2023-09-14 06:20:25,082] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRR12649919_pass_fastqc.html [2023-09-14 06:20:25,082] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search 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[2023-09-14 06:20:25,227] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRR12649882_pass_fastqc.html [2023-09-14 06:20:25,227] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRR12649882_pass_fastqc.html [2023-09-14 06:20:25,234] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRR12649882_pass_fastqc.html [2023-09-14 06:20:25,235] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRR12649882_pass_fastqc.html [2023-09-14 06:20:25,235] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRR12649882_pass_fastqc.html [2023-09-14 06:20:25,235] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRR12649882_pass_fastqc.html [2023-09-14 06:20:25,235] multiqc [DEBUG ] File ignored by 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multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRR12649898_pass_fastqc.html [2023-09-14 06:20:25,485] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRR12649898_pass_fastqc.html [2023-09-14 06:20:25,532] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRR12649887_pass_fastqc.html [2023-09-14 06:20:25,537] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRR12649887_pass_fastqc.html [2023-09-14 06:20:25,537] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRR12649887_pass_fastqc.html [2023-09-14 06:20:25,547] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRR12649887_pass_fastqc.html [2023-09-14 06:20:25,547] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern 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06:20:25,678] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRR12649921_pass_fastqc.html [2023-09-14 06:20:25,682] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRR12649921_pass_fastqc.html [2023-09-14 06:20:25,682] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRR12649921_pass_fastqc.html [2023-09-14 06:20:25,689] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRR12649921_pass_fastqc.html [2023-09-14 06:20:25,689] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRR12649921_pass_fastqc.html [2023-09-14 06:20:25,689] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRR12649921_pass_fastqc.html [2023-09-14 06:20:25,689] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search 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rseqc/read_distribution because it exceeded search pattern filesize limit: SRR12649920_pass_fastqc.html [2023-09-14 06:20:25,848] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRR12649920_pass_fastqc.html [2023-09-14 06:20:25,935] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRR12649920_pass_fastqc.html [2023-09-14 06:20:25,980] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRR12649880_pass_fastqc.html [2023-09-14 06:20:25,985] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRR12649880_pass_fastqc.html [2023-09-14 06:20:25,985] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRR12649880_pass_fastqc.html [2023-09-14 06:20:25,991] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: 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06:20:26,083] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRR12649880_pass_fastqc.html [2023-09-14 06:20:26,122] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRR12649883_pass_fastqc.html [2023-09-14 06:20:26,126] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRR12649883_pass_fastqc.html [2023-09-14 06:20:26,127] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRR12649883_pass_fastqc.html [2023-09-14 06:20:26,134] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRR12649883_pass_fastqc.html [2023-09-14 06:20:26,135] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRR12649883_pass_fastqc.html [2023-09-14 06:20:26,135] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRR12649883_pass_fastqc.html [2023-09-14 06:20:26,135] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRR12649883_pass_fastqc.html [2023-09-14 06:20:26,135] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRR12649883_pass_fastqc.html [2023-09-14 06:20:26,135] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRR12649883_pass_fastqc.html [2023-09-14 06:20:26,135] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRR12649883_pass_fastqc.html [2023-09-14 06:20:26,226] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRR12649883_pass_fastqc.html [2023-09-14 06:20:26,264] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRR12649881_pass_fastqc.html [2023-09-14 06:20:26,269] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRR12649881_pass_fastqc.html [2023-09-14 06:20:26,270] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRR12649881_pass_fastqc.html [2023-09-14 06:20:26,277] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRR12649881_pass_fastqc.html [2023-09-14 06:20:26,278] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRR12649881_pass_fastqc.html [2023-09-14 06:20:26,278] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRR12649881_pass_fastqc.html [2023-09-14 06:20:26,282] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRR12649881_pass_fastqc.html [2023-09-14 06:20:26,282] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRR12649881_pass_fastqc.html [2023-09-14 06:20:26,282] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRR12649881_pass_fastqc.html [2023-09-14 06:20:26,283] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRR12649881_pass_fastqc.html [2023-09-14 06:20:26,390] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRR12649881_pass_fastqc.html [2023-09-14 06:20:26,429] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SRR12649918_pass_fastqc.html [2023-09-14 06:20:26,433] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SRR12649918_pass_fastqc.html [2023-09-14 06:20:26,434] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SRR12649918_pass_fastqc.html [2023-09-14 06:20:26,439] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: SRR12649918_pass_fastqc.html [2023-09-14 06:20:26,439] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SRR12649918_pass_fastqc.html [2023-09-14 06:20:26,439] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: SRR12649918_pass_fastqc.html [2023-09-14 06:20:26,439] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: SRR12649918_pass_fastqc.html [2023-09-14 06:20:26,439] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: SRR12649918_pass_fastqc.html [2023-09-14 06:20:26,440] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: SRR12649918_pass_fastqc.html [2023-09-14 06:20:26,440] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: SRR12649918_pass_fastqc.html [2023-09-14 06:20:26,531] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SRR12649918_pass_fastqc.html [2023-09-14 06:20:26,549] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-09-14 06:20:26,552] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-09-14 06:20:26,552] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-09-14 06:20:26,558] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-09-14 06:20:26,568] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-09-14 06:20:26,576] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectMetrics.qsub [2023-09-14 06:20:26,579] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CollectMetrics.qsub [2023-09-14 06:20:26,580] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectMetrics.qsub [2023-09-14 06:20:26,589] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectMetrics.qsub [2023-09-14 06:20:26,609] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: CollectMetrics.qsub [2023-09-14 06:20:26,617] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-09-14 06:20:26,621] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-09-14 06:20:26,628] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-09-14 06:20:26,641] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-09-14 06:20:26,644] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-09-14 06:20:26,671] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_SRP282_M10.o836943 [2023-09-14 06:20:26,674] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_SRP282_M10.o836943 [2023-09-14 06:20:26,675] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_SRP282_M10.o836943 [2023-09-14 06:20:26,681] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_SRP282_M10.o836943 [2023-09-14 06:20:26,689] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_SRP282_M10.o836943 [2023-09-14 06:20:26,697] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_SRP282_M4.o836936 [2023-09-14 06:20:26,701] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_SRP282_M4.o836936 [2023-09-14 06:20:26,707] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_SRP282_M4.o836936 [2023-09-14 06:20:26,715] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_SRP282_M4.o836936 [2023-09-14 06:20:26,728] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_SRP282_M4.o836936 [2023-09-14 06:20:26,737] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_SRP282_M2.o836934 [2023-09-14 06:20:26,740] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_SRP282_M2.o836934 [2023-09-14 06:20:26,740] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_SRP282_M2.o836934 [2023-09-14 06:20:26,746] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_SRP282_M2.o836934 [2023-09-14 06:20:26,761] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_SRP282_M2.o836934 [2023-09-14 06:20:26,769] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_SRP282_M7.o836939 [2023-09-14 06:20:26,772] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_SRP282_M7.o836939 [2023-09-14 06:20:26,772] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_SRP282_M7.o836939 [2023-09-14 06:20:26,778] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_SRP282_M7.o836939 [2023-09-14 06:20:26,787] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_SRP282_M7.o836939 [2023-09-14 06:20:26,795] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_SRP282_M3.o836935 [2023-09-14 06:20:26,798] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_SRP282_M3.o836935 [2023-09-14 06:20:26,799] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_SRP282_M3.o836935 [2023-09-14 06:20:26,805] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_SRP282_M3.o836935 [2023-09-14 06:20:26,823] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_SRP282_M3.o836935 [2023-09-14 06:20:26,833] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_SRP282_M5.o836937 [2023-09-14 06:20:26,836] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_SRP282_M5.o836937 [2023-09-14 06:20:26,836] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_SRP282_M5.o836937 [2023-09-14 06:20:26,843] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_SRP282_M5.o836937 [2023-09-14 06:20:26,857] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_SRP282_M5.o836937 [2023-09-14 06:20:26,865] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_SRP282_M12.o836945 [2023-09-14 06:20:26,869] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_SRP282_M12.o836945 [2023-09-14 06:20:26,869] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_SRP282_M12.o836945 [2023-09-14 06:20:26,874] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_SRP282_M12.o836945 [2023-09-14 06:20:26,887] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_SRP282_M12.o836945 [2023-09-14 06:20:26,896] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_SRP282_M9.o836942 [2023-09-14 06:20:26,898] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_SRP282_M9.o836942 [2023-09-14 06:20:26,899] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_SRP282_M9.o836942 [2023-09-14 06:20:26,905] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_SRP282_M9.o836942 [2023-09-14 06:20:26,924] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_SRP282_M9.o836942 [2023-09-14 06:20:26,933] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_SRP282_M8.o836941 [2023-09-14 06:20:26,935] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_SRP282_M8.o836941 [2023-09-14 06:20:26,935] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_SRP282_M8.o836941 [2023-09-14 06:20:26,940] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_SRP282_M8.o836941 [2023-09-14 06:20:26,952] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_SRP282_M8.o836941 [2023-09-14 06:20:26,960] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_SRP282_M6.o836938 [2023-09-14 06:20:26,963] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_SRP282_M6.o836938 [2023-09-14 06:20:26,963] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_SRP282_M6.o836938 [2023-09-14 06:20:26,968] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_SRP282_M6.o836938 [2023-09-14 06:20:26,978] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_SRP282_M6.o836938 [2023-09-14 06:20:26,986] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_SRP282_M11.o836944 [2023-09-14 06:20:26,988] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_SRP282_M11.o836944 [2023-09-14 06:20:26,989] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_SRP282_M11.o836944 [2023-09-14 06:20:26,994] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_SRP282_M11.o836944 [2023-09-14 06:20:27,003] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_SRP282_M11.o836944 [2023-09-14 06:20:27,010] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_SRP282_M1.o836933 [2023-09-14 06:20:27,013] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_SRP282_M1.o836933 [2023-09-14 06:20:27,013] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_SRP282_M1.o836933 [2023-09-14 06:20:27,018] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_SRP282_M1.o836933 [2023-09-14 06:20:27,036] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_SRP282_M1.o836933 [2023-09-14 06:20:27,130] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2023-09-14 06:20:27,135] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2023-09-14 06:20:27,135] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2023-09-14 06:20:27,144] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2023-09-14 06:20:27,144] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2023-09-14 06:20:27,144] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2023-09-14 06:20:27,144] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2023-09-14 06:20:27,145] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2023-09-14 06:20:27,145] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2023-09-14 06:20:27,145] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2023-09-14 06:20:27,145] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2023-09-14 06:20:27,145] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2023-09-14 06:20:27,145] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2023-09-14 06:20:28,411] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2023-09-14 06:20:28,499] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2023-09-14 06:20:28,502] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2023-09-14 06:20:28,503] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2023-09-14 06:20:28,507] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2023-09-14 06:20:28,567] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2023-09-14 06:20:28,596] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2023-09-14 06:20:28,601] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2023-09-14 06:20:28,601] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2023-09-14 06:20:28,609] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2023-09-14 06:20:28,662] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2023-09-14 06:20:29,005] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.1.2 [2023-09-14 06:20:29,006] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.1.2 [2023-09-14 06:20:29,023] multiqc.modules.rseqc.rseqc [INFO ] Found 24 infer_experiment reports [2023-09-14 06:20:29,030] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: SRP282F_M6_sorted [2023-09-14 06:20:29,031] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: SRP282F_M10_sorted [2023-09-14 06:20:29,032] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: SRP282F_M12_sorted [2023-09-14 06:20:29,033] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: SRP282_M6_sorted [2023-09-14 06:20:29,034] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: SRP282_M7_sorted [2023-09-14 06:20:29,035] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: SRP282_M10_sorted [2023-09-14 06:20:29,036] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: SRP282_M4_sorted [2023-09-14 06:20:29,037] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: SRP282_M9_sorted [2023-09-14 06:20:29,038] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: SRP282_M8_sorted [2023-09-14 06:20:29,039] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: SRP282F_M7_sorted [2023-09-14 06:20:29,040] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: SRP282_M11_sorted [2023-09-14 06:20:29,041] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: SRP282F_M1_sorted [2023-09-14 06:20:29,042] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: SRP282F_M4_sorted [2023-09-14 06:20:29,042] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: SRP282F_M8_sorted [2023-09-14 06:20:29,043] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: SRP282F_M2_sorted [2023-09-14 06:20:29,044] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: SRP282F_M5_sorted [2023-09-14 06:20:29,044] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: SRP282F_M3_sorted [2023-09-14 06:20:29,045] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: SRP282_M1_sorted [2023-09-14 06:20:29,046] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: SRP282F_M9_sorted [2023-09-14 06:20:29,046] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: SRP282_M5_sorted [2023-09-14 06:20:29,047] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: SRP282_M3_sorted [2023-09-14 06:20:29,048] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: SRP282_M2_sorted [2023-09-14 06:20:29,048] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: SRP282_M12_sorted [2023-09-14 06:20:29,049] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: SRP282F_M11_sorted [2023-09-14 06:20:29,049] multiqc.modules.featureCounts.feature_counts [INFO ] Found 24 reports [2023-09-14 06:20:29,087] multiqc.modules.picard.picard [INFO ] Found 12 RnaSeqMetrics reports [2023-09-14 06:20:29,131] multiqc.modules.samtools.samtools [INFO ] Found 72 flagstat reports [2023-09-14 06:20:29,154] multiqc.modules.star.star [INFO ] Found 24 reports [2023-09-14 06:20:29,641] multiqc.modules.fastqc.fastqc [INFO ] Found 12 reports [2023-09-14 06:20:29,850] multiqc [INFO ] Compressing plot data [2023-09-14 06:20:30,170] multiqc [INFO ] Report : multiqc_report/multiqc_report.html [2023-09-14 06:20:30,171] multiqc [INFO ] Data : multiqc_report/multiqc_data [2023-09-14 06:20:30,171] multiqc [DEBUG ] Moving data file from '/scratch/tmpssus5318/multiqc_data' to 'multiqc_report/multiqc_data' [2023-09-14 06:20:30,291] multiqc [INFO ] MultiQC complete