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"/projectnb/wax-dk/max/SRP282531/SAMPLES/SRP282_M3/aligner/SRP282_M3_statistics_for_primary_reads.txt", "SRP282_M3_statistics_for_primary_unique_reads": "/projectnb/wax-dk/max/SRP282531/SAMPLES/SRP282_M3/aligner/SRP282_M3_statistics_for_primary_unique_reads.txt", "SRP282_M3_statistics_for_all_accepted_reads": "/projectnb/wax-dk/max/SRP282531/SAMPLES/SRP282_M3/aligner/SRP282_M3_statistics_for_all_accepted_reads.txt", "SRP282_M2_statistics_for_primary_unique_reads": "/projectnb/wax-dk/max/SRP282531/SAMPLES/SRP282_M2/aligner/SRP282_M2_statistics_for_primary_unique_reads.txt", "SRP282_M2_statistics_for_primary_reads": "/projectnb/wax-dk/max/SRP282531/SAMPLES/SRP282_M2/aligner/SRP282_M2_statistics_for_primary_reads.txt", "SRP282_M2_statistics_for_all_accepted_reads": "/projectnb/wax-dk/max/SRP282531/SAMPLES/SRP282_M2/aligner/SRP282_M2_statistics_for_all_accepted_reads.txt", "SRP282_M12_statistics_for_primary_unique_reads": 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"/projectnb/wax-dk/max/SRP282531/Scripts/03_FASTQC/Job_Summary/SRP282_M8_FASTQC/SRR12649879_pass_fastqc.zip", "SRR12649909_pass": "/projectnb/wax-dk/max/SRP282531/Scripts/03_FASTQC/Job_Summary/SRP282_M1_FASTQC/SRR12649909_pass_fastqc.zip", "SRR12649919_pass": "/projectnb/wax-dk/max/SRP282531/Scripts/03_FASTQC/Job_Summary/SRP282_M9_FASTQC/SRR12649919_pass_fastqc.zip", "SRR12649882_pass": "/projectnb/wax-dk/max/SRP282531/Scripts/03_FASTQC/Job_Summary/SRP282_M11_FASTQC/SRR12649882_pass_fastqc.zip", "SRR12649898_pass": "/projectnb/wax-dk/max/SRP282531/Scripts/03_FASTQC/Job_Summary/SRP282_M2_FASTQC/SRR12649898_pass_fastqc.zip", "SRR12649887_pass": "/projectnb/wax-dk/max/SRP282531/Scripts/03_FASTQC/Job_Summary/SRP282_M3_FASTQC/SRR12649887_pass_fastqc.zip", "SRR12649921_pass": "/projectnb/wax-dk/max/SRP282531/Scripts/03_FASTQC/Job_Summary/SRP282_M5_FASTQC/SRR12649921_pass_fastqc.zip", "SRR12649920_pass": "/projectnb/wax-dk/max/SRP282531/Scripts/03_FASTQC/Job_Summary/SRP282_M6_FASTQC/SRR12649920_pass_fastqc.zip", "SRR12649880_pass": "/projectnb/wax-dk/max/SRP282531/Scripts/03_FASTQC/Job_Summary/SRP282_M7_FASTQC/SRR12649880_pass_fastqc.zip", "SRR12649883_pass": "/projectnb/wax-dk/max/SRP282531/Scripts/03_FASTQC/Job_Summary/SRP282_M4_FASTQC/SRR12649883_pass_fastqc.zip", "SRR12649881_pass": "/projectnb/wax-dk/max/SRP282531/Scripts/03_FASTQC/Job_Summary/SRP282_M12_FASTQC/SRR12649881_pass_fastqc.zip", "SRR12649918_pass": "/projectnb/wax-dk/max/SRP282531/Scripts/03_FASTQC/Job_Summary/SRP282_M10_FASTQC/SRR12649918_pass_fastqc.zip" } } }, "report_general_stats_data": [ { "SRP282F_M6_sorted": { "Total": 18512476, "Assigned": 9639216, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 8873260, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 52.06875622688181 }, "SRP282F_M10_sorted": { "Total": 341123, "Assigned": 158113, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 183010, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 46.35072979541104 }, "SRP282F_M12_sorted": { "Total": 161100, "Assigned": 53681, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 107419, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 33.321539416511484 }, "SRP282_M6_sorted": { "Total": 18512476, "Assigned": 9639216, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 8873260, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 52.06875622688181 }, "SRP282_M7_sorted": { "Total": 11530555, "Assigned": 7775039, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 3755516, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 67.42987653239588 }, "SRP282_M10_sorted": { "Total": 341123, "Assigned": 158113, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 183010, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 46.35072979541104 }, "SRP282_M4_sorted": { "Total": 31356182, "Assigned": 19425132, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 11931050, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 61.9499274497131 }, "SRP282_M9_sorted": { "Total": 1369569, "Assigned": 549631, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 819938, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 40.13167646171898 }, "SRP282_M8_sorted": { "Total": 1705351, "Assigned": 970057, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 735294, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 56.88312845859884 }, "SRP282F_M7_sorted": { "Total": 11530555, "Assigned": 7775039, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 3755516, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 67.42987653239588 }, "SRP282_M11_sorted": { "Total": 2915308, "Assigned": 1909963, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 1005345, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 65.51496445658572 }, 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"Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 56.88312845859884 }, "SRP282F_M2_sorted": { "Total": 10008072, "Assigned": 5132870, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 4875202, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 51.28730089072101 }, "SRP282F_M5_sorted": { "Total": 19439395, "Assigned": 11210120, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 8229275, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 57.66702101582894 }, "SRP282F_M3_sorted": { "Total": 16897361, "Assigned": 9963510, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 6933851, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 58.96488806743254 }, "SRP282_M1_sorted": { "Total": 37905687, "Assigned": 19874150, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 18031537, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 52.43052315606362 }, "SRP282F_M9_sorted": { "Total": 1369569, "Assigned": 549631, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 819938, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, 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