Sample total_passed total_failed secondary_passed secondary_failed supplementary_passed supplementary_failed duplicates_passed duplicates_failed mapped_passed mapped_failed mapped_passed_pct mapped_failed_pct paired in sequencing_passed paired in sequencing_failed read1_passed read1_failed read2_passed read2_failed properly paired_passed properly paired_failed properly paired_passed_pct properly paired_failed_pct with itself and mate mapped_passed with itself and mate mapped_failed singletons_passed singletons_failed singletons_passed_pct singletons_failed_pct with mate mapped to a different chr_passed with mate mapped to a different chr_failed with mate mapped to a different chr (mapQ >= 5)_passed with mate mapped to a different chr (mapQ >= 5)_failed flagstat_total SRP282F_M10_statistics_for_all_accepted_reads 966011 0 447029 0 0 0 0 0 966011 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 966011 SRP282F_M10_statistics_for_primary_reads 518982 0 0 0 0 0 0 0 518982 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 518982 SRP282F_M10_statistics_for_primary_unique_reads 341123 0 0 0 0 0 0 0 341123 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 341123 SRP282F_M11_statistics_for_all_accepted_reads 6939985 0 2823002 0 0 0 0 0 6939985 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 6939985 SRP282F_M11_statistics_for_primary_reads 4116983 0 0 0 0 0 0 0 4116983 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 4116983 SRP282F_M11_statistics_for_primary_unique_reads 2915308 0 0 0 0 0 0 0 2915308 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 2915308 SRP282F_M12_statistics_for_all_accepted_reads 425236 0 177989 0 0 0 0 0 425236 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 425236 SRP282F_M12_statistics_for_primary_reads 247247 0 0 0 0 0 0 0 247247 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 247247 SRP282F_M12_statistics_for_primary_unique_reads 161100 0 0 0 0 0 0 0 161100 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 161100 SRP282F_M1_statistics_for_all_accepted_reads 102745506 0 44981650 0 0 0 0 0 102745506 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 102745506 SRP282F_M1_statistics_for_primary_reads 57763856 0 0 0 0 0 0 0 57763856 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 57763856 SRP282F_M1_statistics_for_primary_unique_reads 37905687 0 0 0 0 0 0 0 37905687 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 37905687 SRP282F_M2_statistics_for_all_accepted_reads 27724122 0 12354161 0 0 0 0 0 27724122 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 27724122 SRP282F_M2_statistics_for_primary_reads 15369961 0 0 0 0 0 0 0 15369961 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 15369961 SRP282F_M2_statistics_for_primary_unique_reads 10008072 0 0 0 0 0 0 0 10008072 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 10008072 SRP282F_M3_statistics_for_all_accepted_reads 44140667 0 18724724 0 0 0 0 0 44140667 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 44140667 SRP282F_M3_statistics_for_primary_reads 25415943 0 0 0 0 0 0 0 25415943 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 25415943 SRP282F_M3_statistics_for_primary_unique_reads 16897361 0 0 0 0 0 0 0 16897361 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 16897361 SRP282F_M4_statistics_for_all_accepted_reads 79294799 0 33218004 0 0 0 0 0 79294799 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 79294799 SRP282F_M4_statistics_for_primary_reads 46076795 0 0 0 0 0 0 0 46076795 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 46076795 SRP282F_M4_statistics_for_primary_unique_reads 31356182 0 0 0 0 0 0 0 31356182 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 31356182 SRP282F_M5_statistics_for_all_accepted_reads 49736090 0 20921462 0 0 0 0 0 49736090 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 49736090 SRP282F_M5_statistics_for_primary_reads 28814628 0 0 0 0 0 0 0 28814628 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 28814628 SRP282F_M5_statistics_for_primary_unique_reads 19439395 0 0 0 0 0 0 0 19439395 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 19439395 SRP282F_M6_statistics_for_all_accepted_reads 51619575 0 22855750 0 0 0 0 0 51619575 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 51619575 SRP282F_M6_statistics_for_primary_reads 28763825 0 0 0 0 0 0 0 28763825 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 28763825 SRP282F_M6_statistics_for_primary_unique_reads 18512476 0 0 0 0 0 0 0 18512476 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 18512476 SRP282F_M7_statistics_for_all_accepted_reads 26245366 0 10284980 0 0 0 0 0 26245366 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 26245366 SRP282F_M7_statistics_for_primary_reads 15960386 0 0 0 0 0 0 0 15960386 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 15960386 SRP282F_M7_statistics_for_primary_unique_reads 11530555 0 0 0 0 0 0 0 11530555 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 11530555 SRP282F_M8_statistics_for_all_accepted_reads 4569590 0 2006026 0 0 0 0 0 4569590 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 4569590 SRP282F_M8_statistics_for_primary_reads 2563564 0 0 0 0 0 0 0 2563564 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 2563564 SRP282F_M8_statistics_for_primary_unique_reads 1705351 0 0 0 0 0 0 0 1705351 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 1705351 SRP282F_M9_statistics_for_all_accepted_reads 4504521 0 2231092 0 0 0 0 0 4504521 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 4504521 SRP282F_M9_statistics_for_primary_reads 2273429 0 0 0 0 0 0 0 2273429 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 2273429 SRP282F_M9_statistics_for_primary_unique_reads 1369569 0 0 0 0 0 0 0 1369569 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 1369569 SRP282_M10_statistics_for_all_accepted_reads 966011 0 447029 0 0 0 0 0 966011 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 966011 SRP282_M10_statistics_for_primary_reads 518982 0 0 0 0 0 0 0 518982 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 518982 SRP282_M10_statistics_for_primary_unique_reads 341123 0 0 0 0 0 0 0 341123 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 341123 SRP282_M11_statistics_for_all_accepted_reads 6939985 0 2823002 0 0 0 0 0 6939985 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 6939985 SRP282_M11_statistics_for_primary_reads 4116983 0 0 0 0 0 0 0 4116983 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 4116983 SRP282_M11_statistics_for_primary_unique_reads 2915308 0 0 0 0 0 0 0 2915308 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 2915308 SRP282_M12_statistics_for_all_accepted_reads 425236 0 177989 0 0 0 0 0 425236 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 425236 SRP282_M12_statistics_for_primary_reads 247247 0 0 0 0 0 0 0 247247 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 247247 SRP282_M12_statistics_for_primary_unique_reads 161100 0 0 0 0 0 0 0 161100 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 161100 SRP282_M1_statistics_for_all_accepted_reads 102745506 0 44981650 0 0 0 0 0 102745506 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 102745506 SRP282_M1_statistics_for_primary_reads 57763856 0 0 0 0 0 0 0 57763856 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 57763856 SRP282_M1_statistics_for_primary_unique_reads 37905687 0 0 0 0 0 0 0 37905687 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 37905687 SRP282_M2_statistics_for_all_accepted_reads 27724122 0 12354161 0 0 0 0 0 27724122 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 27724122 SRP282_M2_statistics_for_primary_reads 15369961 0 0 0 0 0 0 0 15369961 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 15369961 SRP282_M2_statistics_for_primary_unique_reads 10008072 0 0 0 0 0 0 0 10008072 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 10008072 SRP282_M3_statistics_for_all_accepted_reads 44140667 0 18724724 0 0 0 0 0 44140667 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 44140667 SRP282_M3_statistics_for_primary_reads 25415943 0 0 0 0 0 0 0 25415943 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 25415943 SRP282_M3_statistics_for_primary_unique_reads 16897361 0 0 0 0 0 0 0 16897361 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 16897361 SRP282_M4_statistics_for_all_accepted_reads 79294799 0 33218004 0 0 0 0 0 79294799 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 79294799 SRP282_M4_statistics_for_primary_reads 46076795 0 0 0 0 0 0 0 46076795 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 46076795 SRP282_M4_statistics_for_primary_unique_reads 31356182 0 0 0 0 0 0 0 31356182 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 31356182 SRP282_M5_statistics_for_all_accepted_reads 49736090 0 20921462 0 0 0 0 0 49736090 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 49736090 SRP282_M5_statistics_for_primary_reads 28814628 0 0 0 0 0 0 0 28814628 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 28814628 SRP282_M5_statistics_for_primary_unique_reads 19439395 0 0 0 0 0 0 0 19439395 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 19439395 SRP282_M6_statistics_for_all_accepted_reads 51619575 0 22855750 0 0 0 0 0 51619575 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 51619575 SRP282_M6_statistics_for_primary_reads 28763825 0 0 0 0 0 0 0 28763825 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 28763825 SRP282_M6_statistics_for_primary_unique_reads 18512476 0 0 0 0 0 0 0 18512476 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 18512476 SRP282_M7_statistics_for_all_accepted_reads 26245366 0 10284980 0 0 0 0 0 26245366 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 26245366 SRP282_M7_statistics_for_primary_reads 15960386 0 0 0 0 0 0 0 15960386 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 15960386 SRP282_M7_statistics_for_primary_unique_reads 11530555 0 0 0 0 0 0 0 11530555 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 11530555 SRP282_M8_statistics_for_all_accepted_reads 4569590 0 2006026 0 0 0 0 0 4569590 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 4569590 SRP282_M8_statistics_for_primary_reads 2563564 0 0 0 0 0 0 0 2563564 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 2563564 SRP282_M8_statistics_for_primary_unique_reads 1705351 0 0 0 0 0 0 0 1705351 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 1705351 SRP282_M9_statistics_for_all_accepted_reads 4504521 0 2231092 0 0 0 0 0 4504521 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 4504521 SRP282_M9_statistics_for_primary_reads 2273429 0 0 0 0 0 0 0 2273429 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 2273429 SRP282_M9_statistics_for_primary_unique_reads 1369569 0 0 0 0 0 0 0 1369569 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 1369569