TCPOBOP.R1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	TCPOBOP.R1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	49236514
Sequences flagged as poor quality	0
Sequence length	50
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTAGCTTATCTCGTATGC	192832	0.3916442987819974	TruSeq Adapter, Index 10 (100% over 50bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	191855	43.401093	1
ATCGGAA	192500	43.183273	2
CGTCTGA	192775	43.019226	16
TCGGAAG	193555	42.941082	3
ACACGTC	193255	42.90874	13
CGTATGC	190070	42.90684	44
ACGTCTG	192895	42.897728	15
CTCGTAT	187285	42.77642	42
TCGTATG	190915	42.713566	43
TCTCGTA	178415	42.69527	41
CGGAAGA	194175	42.686493	4
ACGGCTA	97675	42.49795	32
ATCTCGT	179425	42.42853	40
CACGTCT	195410	42.4166	14
CGGCTAC	97665	42.40487	33
GCACACG	196260	42.247044	11
CACACGT	196650	42.20312	12
TCACGGC	99250	41.969006	30
GTCACGG	99655	41.909046	29
AGTCACG	100970	41.80588	28