FastQCFastQC Report
Thu 5 Jan 2023
G197M15_CKDL220032286-1A_HT3KHDSX5_LC_R1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameG197M15_CKDL220032286-1A_HT3KHDSX5_LC_R1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26689845
Sequences flagged as poor quality0
Sequence length150
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGAATTCGTATCTCGTAT350940.13148821208965433TruSeq Adapter, Index 7 (97% over 35bp)

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.7)