FastQCFastQC Report
Thu 18 May 2023
G202M12_CKDL230013148-1A_H5NKYDSX7_L1_R2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameG202M12_CKDL230013148-1A_H5NKYDSX7_L1_R2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11178559
Sequences flagged as poor quality0
Sequence length150
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAATCAGACGCCCACAGGAGCCAGGCAGGACACACAGGGCCTGTGCT188730.16883213659291865No Hit
CTCCTGAGCAAACCCTGCAGGACAGGAGACATGACAAATGGTGGGATTGT186970.16725769394785142No Hit
GAGAGATAGGAGTGCCCAGCCAGCCACAAAGGCAGAAGAAAAAACACACG175120.15665704318418858No Hit
ACCAGAGAGGACTGCAGGAAAGCTTGGGAAGTGGCGGGGTAAAACAAACA165260.14783658609307335No Hit
GGGCAGAGGGCAGAGGGTAAGGGCAGAGGGTAAAGGGTAGCAGGAGGCAG160690.14374840263400676No Hit
GAGCTGGGGGGGAAAAAAACTGAGCTGCCAGATGTCAAAGTAGCCAAAGT159900.1430416925830959No Hit
AACTATAGCTTTAAAGCCACAGAAAAATATAAAACCAAATAGTGTAGATA155590.1391860972420506No Hit
GAAACCTGAGGGAGAAAATGGACTTCACACTCCTAACAGAATCAGAGATC153620.13742379496319695No Hit
GCCAAGCTGCACCCCCATGACCTACTTAATCCAACCAGGCCAAGCCCCAC141310.12641164214457337No Hit
TGGCAGGACAGACTTCAGGCTGATCCAGTGAACAGGGCAGATGTGAGGCA139940.12518608167653808No Hit
AGGAGAAACAGACAGGAGAGGGTGAACACCAGGACCAGGATTGGATCCAT127920.11443335406647673No Hit
TTGCAACTCCAACCCCAGAGGATCTGACACCTCTTATGGTGTCATTCAGA121610.10878861935603686No Hit
CTGAGCAGTAGAGCAGGGGTGCTGTGGCACATAGGACAGGAGATAGAGCT119460.10686529453393769No Hit
AGTGGGGAGGGGGTAGGAAGGAGTCTGAGGCCAGCCATATTGATGTGACC114510.10243717459468614No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)