FastQCFastQC Report
Thu 18 May 2023
G202M8_CKDL230013148-1A_H5NKYDSX7_L1_R1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameG202M8_CKDL230013148-1A_H5NKYDSX7_L1_R1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8811250
Sequences flagged as poor quality0
Sequence length150
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGTCCAGCAATATTTCAAATCTAAGTTTGCTCTGAGTCAACTACAGACC233560.2650702227266279No Hit
ACAGGTATCCACAACTGGCTCTAGAGTAGATCCAAGTACACCTTCATCTC215820.244936870478082No Hit
AGGCTATCACTGGCTTCCCTTTTGTCTACATAAATGCTTTCACGGGCCTG202540.22986522911051213No Hit
GGCTGGCGTCTGAAGCCCCAGCCTAGCAGCATCGGACCTGAGTTCCTCTG183180.2078933182011633No Hit
TGATGCTTTACCTTCATCACTGATGCGAACATCCAGCTTCTCTCTGACTC171420.19454674421903814No Hit
CGGCTTGCTTGCTTGCTCGCTTTCAGATCTCTAAAGGCATCTTGGTTTCT165240.18753298340190097No Hit
TCATGGAAGGTCAGCTTTGAGGTTTCAGAAGCCCATACCATTCCCAGTTA160970.18268690594410555No Hit
TTCCTGTGATTTTTTTTTCTCTTCCAGAGTTCAAAAACTGGTGACGAAAG158550.17994041708043695No Hit
CCTGCCTAGTGTCTGCCTGCCGAGAGGACTGGACTGGACTGTTGCTGAGT131590.14934316924386437No Hit
CTCCTGCCTGATGGAGTATCGATTCTCCGAGTGCAAAGTCCAGCATGCCG126010.14301035607887644No Hit
CCTCCCACCCCTGGGCTGTACCTGCCACAACCTTCTCTGCGTGACCTGTG116840.13260320612852886No Hit
TTATGGAAAAAGTCAACAACAGGAGTCAGAGCAGCCGGAAAAGCATGGAC108390.1230131933607604No Hit
TGACTTAGGAGGAAGGTCAGAAAAACATGGTGATTTCGGGCACAGAATCT107740.12227550007093205No Hit
ATAATTACCAGGGCTTCACCTTTTGGCCACTATACTGTTAATTTGCAGTT106720.12111788906227834No Hit
ATCAGAGCTGCTTCATGAGATCCAACTGCTCTAAGACCCAGTAACCTTTC105500.11973329550290822No Hit
TCACTGGTGATGAGAAACATTGCATGGAGGGCTTCAGAGTCAGAGGCCTT104620.11873457227975599No Hit
TTAGGTATAGCAGCAAGTATCTTCACCCTCAGAGTCACTACTCCCACACT103650.11763370690878137No Hit
TTAGCTCCAGACTGACACAAATGGTTTGAAGCCTGTTGTTTGCTGCTTCT100790.11438785643353667No Hit
TCAATCAGTGGCATCAATTTGAACAAATTATTGAGAAATGATAAAGCTGT100660.114240317775571No Hit
CCAACACAAAACCCCAAGAAAAATCATTGGTTCACCAAGTTGGGCTTTGG97180.11029082139310539No Hit
AGGTCAGCTTTGAGGTTTCAGAAGCCCATACCATTCCCAGTTAGCTCTCT96980.110063838842389No Hit
ATGCTTTCCTTTATTTGAGTTTCTGTGGTCATGGTGCCACTTCATACCAC96190.10916725776705916No Hit
GGTTGATTTCTCTGACCCTCAACTGGCCTGATTAGAAGACCTGGCATTCT95780.1087019435380905No Hit
TTAAATAAATGGCCCCAAATGATATTTTTGTCCTAAACCAGGTAGCTGGT95620.10852035749751739No Hit
AAAGCAAAGGTACTGAGTCCTGTGTGTCATCATTTCTAAGAGCTCCCTGG94390.10712441481061143No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)