FastQCFastQC Report
Thu 4 Jan 2024
G219M11_CKDL230043734-1A_22GGGVLT3_L8_R1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameG219M11_CKDL230043734-1A_22GGGVLT3_L8_R1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18195015
Sequences flagged as poor quality0
Sequence length150
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATGGAGAGTCCAAGAGCCAAACCCGGAGGTGAGCAGAGTCCAAGAGC299260.16447362093408552No Hit
CCACTCTTCCCTTCCCTTTGGGGCCTGAAGCCTTCTTGGTCTAATCTGTT273700.15042581718124443No Hit
TCCCATCATGTTCCTCAGGGCTAGAATGAGGATCTGAGCCGACCAGTTAA255280.14030216518095753No Hit
GCTGCCTCTGCCGCCGCCTCCCCTGGGCTCCGGCCTCTTCCAGGCCGCGC251270.138098264826932No Hit
AGGACACAATCTTGAAGAGGTGCACTCCAGTGACTTAGGAGGAAGGTCAG243750.13396526466177686No Hit
CCTCATCCTGGATGCTGCTCTTGCCATGGAGTTGCTGTGTACCTCTTTGC235250.12929365543254567No Hit
CCTTTTGTGATGTTCAGCTAATGCCTGTCTGGATCAGGACACAATCTTGA224850.12357780414030985No Hit
CCTTGAGGTCAAGGACTTTAGCCTGAGTCTGAGTTGGAGTTTTGTCAACC222110.12207189716524004No Hit
CCACCCTGTCCCAACCCCCATGCCCTGTTCCTGCAGAGCCTGGCTCAAAG220950.12143435990572143No Hit
GCTTCCCAGTCTGTGTTCTCCCACTTGGGGGGTAGAGGAACGGCAGACTT213850.1175321921965989No Hit
AGGCAGCAGAGGTAGAGCTTCCTTGTTGCCACAAATGAGAACACAAGAAT212400.11673527062220064No Hit
CCAAGACCACATGATCTTCTCAAGCAAGAGAGGACAGAGATCTCATGCTC206320.11339369602058585No Hit
TAGGAGGAAGGTCAGAAAAACATGGTGATTTCGGGCACAGAATCTGTACT205000.11266822258734055No Hit
AAACCTGAGACGCACTGGGCTTAAAAGTAACTGAGCACTGAACTTAGGAG202130.11109086747111778No Hit
GAAGTCATGGTTGTTTGGATAGTTCAGGCCAAACAGGGCCATTTAGTTGG189070.10391307729067549No Hit
CACGCCACGCTGGAGCAATGGAGCAGGTCTTCCCCTAATGAGCTGCACAC189050.10390208526895965No Hit
TCCCCTGAGATGTGATCCTGAGACAGAATCCCAGGGCAAAGTCCTGCAAG182070.10006586969013216No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)