Sample	total_reads	paired_total	paired_aligned_none	paired_aligned_one	paired_aligned_multi	paired_aligned_discord_one	paired_aligned_mate_none	paired_aligned_mate_one	paired_aligned_mate_multi	overall_alignment_rate	paired_aligned_mate_multi_halved	paired_aligned_mate_none_halved	paired_aligned_mate_one_halved
G219M10_CKDL230043734-1A_22GGGVLT3_L8_R1	17421402	17421402	1070367	15539789	811246	60316	1823194	184148	12760	94.77	6380.0	911597.0	92074.0
G219M11_CKDL230043734-1A_22GGGVLT3_L8_R1	18195015	18195015	1151965	16175936	867114	54594	1993190	188514	13038	94.52	6519.0	996595.0	94257.0
G219M12_CKDL230043734-1A_22GGGVLT3_L8_R1	20742635	20742635	1397564	18354674	990397	72266	2393776	241622	15198	94.23	7599.0	1196888.0	120811.0
G219M13_CKDL230043734-1A_22GGGVLT3_L8_R1	19378291	19378291	1640057	16838481	899753	64225	2883630	251259	16775	92.56	8387.5	1441815.0	125629.5
G219M14_CKDL230043734-1A_22GGGVLT3_L8_R1	18728932	18728932	1383404	16453463	892065	60703	2415798	216945	12659	93.55	6329.5	1207899.0	108472.5
G219M15_CKDL230043734-1A_22GGGVLT3_L8_R1	18154784	18154784	1512238	15790644	851902	60513	2678207	211856	13387	92.62	6693.5	1339103.5	105928.0
G219M16_CKDL230043734-1A_22GGGVLT3_L8_R1	18935069	18935069	1354921	16677778	902370	71766	2335643	216607	14060	93.83	7030.0	1167821.5	108303.5
G219M17_CKDL230043734-1A_22GGGVLT3_L8_R1	17979181	17979181	1650051	15480293	848837	57454	2920312	248489	16393	91.88	8196.5	1460156.0	124244.5
G219M18_CKDL230043734-1A_22GGGVLT3_L8_R1	18960963	18960963	1664939	16380585	915439	69825	2960648	221305	8275	92.19	4137.5	1480324.0	110652.5
G219M19_CKDL230043734-1A_22GGGVLT3_L8_R1	20306855	20306855	1527274	17739348	1040233	66477	2686357	219711	15526	93.39	7763.0	1343178.5	109855.5
G219M1_CKDL230043734-1A_22GGGVLT3_L8_R1	16834865	16834865	976969	15083977	773919	54083	1653290	181131	11351	95.09	5675.5	826645.0	90565.5
G219M20_CKDL230043734-1A_22GGGVLT3_L8_R1	18118358	18118358	1372624	15828540	917194	64406	2429563	173301	13572	93.3	6786.0	1214781.5	86650.5
G219M21_CKDL230043734-1A_22GGGVLT3_L8_R1	18188513	18188513	1297694	15980476	910343	62158	2272831	185000	13241	93.75	6620.5	1136415.5	92500.0
G219M22_CKDL230043734-1A_22GGGVLT3_L8_R1	18542810	18542810	1602079	16036634	904097	62524	2876832	187100	15178	92.24	7589.0	1438416.0	93550.0
G219M23_CKDL230043734-1A_22GGGVLT3_L8_R1	20846340	20846340	1488692	18425379	932269	73806	2578256	238096	13420	93.82	6710.0	1289128.0	119048.0
G219M24_CKDL230043734-1A_22GGGVLT3_L8_R1	19310132	19310132	1318843	17109771	881518	69109	2297537	190449	11482	94.05	5741.0	1148768.5	95224.5
G219M25_CKDL230043734-1A_22GGGVLT3_L8_R1	20313499	20313499	1396763	17983615	933121	72213	2424130	212602	12368	94.03	6184.0	1212065.0	106301.0
G219M26_CKDL230043734-1A_22GGGVLT3_L8_R1	17293170	17293170	1353873	15154772	784525	63684	2378219	191345	10814	93.12	5407.0	1189109.5	95672.5
G219M27_CKDL230043734-1A_22GGGVLT3_L8_R1	19189733	19189733	1456289	16854480	878964	66426	2564838	202895	11993	93.32	5996.5	1282419.0	101447.5
G219M28_CKDL230043734-1A_22GGGVLT3_L8_R1	18292022	18292022	1590696	15878786	822540	59669	2862844	186834	12376	92.17	6188.0	1431422.0	93417.0
G219M29_CKDL230043734-1A_22GGGVLT3_L8_R1	19708570	19708570	1703296	17141736	863538	67635	3083009	177188	11125	92.18	5562.5	1541504.5	88594.0
G219M2_CKDL230043734-1A_22GGGVLT3_L8_R1	17214133	17214133	962367	15438380	813386	54066	1622624	182155	11823	95.29	5911.5	811312.0	91077.5
G219M30_CKDL230043734-1A_22GGGVLT3_L8_R1	17760099	17760099	1506733	15453956	799410	60015	2697327	184500	11609	92.41	5804.5	1348663.5	92250.0
G219M31_CKDL230043734-1A_22GGGVLT3_L8_R1	19918993	19918993	1479938	17555886	883169	65373	2650867	168118	10145	93.35	5072.5	1325433.5	84059.0
G219M32_CKDL230043734-1A_22GGGVLT3_L8_R1	23691645	23691645	2170730	20497074	1023841	84959	3927073	231411	13058	91.71	6529.0	1963536.5	115705.5
G219M33_CKDL230043734-1A_22GGGVLT3_L8_R1	23144317	23144317	2218548	19939560	986209	80691	4025639	236957	13118	91.3	6559.0	2012819.5	118478.5
G219M34_CKDL230043734-1A_22GGGVLT3_L8_R1	19561484	19561484	1784754	16962093	814637	73962	3201831	208336	11417	91.82	5708.5	1600915.5	104168.0
G219M35_CKDL230043734-1A_22GGGVLT3_L8_R1	20699517	20699517	1861764	17966997	870756	75146	3324892	235389	12955	91.97	6477.5	1662446.0	117694.5
G219M36_CKDL230043734-1A_22GGGVLT3_L8_R1	22618787	22618787	1944619	19716457	957711	80789	3473017	241894	12749	92.32	6374.5	1736508.5	120947.0
G219M37_CKDL230043734-1A_22GGGVLT3_L8_R1	19177049	19177049	1590699	16725417	860933	66427	2849939	186748	11857	92.57	5928.5	1424969.5	93374.0
G219M38_CKDL230043734-1A_22GGGVLT3_L8_R1	21712246	21712246	1683033	19105724	923489	76434	2997397	204589	11212	93.1	5606.0	1498698.5	102294.5
G219M39_CKDL230043734-1A_22GGGVLT3_L8_R1	19821886	19821886	1818129	17165583	838174	70464	3278122	206591	10617	91.73	5308.5	1639061.0	103295.5
G219M3_CKDL230043734-1A_22GGGVLT3_L8_R1	20334378	20334378	1155189	18209641	969548	64600	1941965	225399	13814	95.22	6907.0	970982.5	112699.5
G219M40_CKDL230043734-1A_22GGGVLT3_L8_R1	17879674	17879674	1875851	15224425	779398	64325	3443184	168861	11007	90.37	5503.5	1721592.0	84430.5
G219M41_CKDL230043734-1A_22GGGVLT3_L8_R1	17544314	17544314	1979031	14820363	744920	63941	3646715	173010	10455	89.61	5227.5	1823357.5	86505.0
G219M42_CKDL230043734-1A_22GGGVLT3_L8_R1	21571660	21571660	2490831	18155746	925083	70707	4629819	197607	12822	89.27	6411.0	2314909.5	98803.5
G219M43_CKDL230043734-1A_22GGGVLT3_L8_R1	18798574	18798574	2238657	15782816	777101	73636	4150698	168412	10932	88.96	5466.0	2075349.0	84206.0
G219M44_CKDL230043734-1A_22GGGVLT3_L8_R1	21662306	21662306	2499333	18269012	893961	82460	4621289	199837	12620	89.33	6310.0	2310644.5	99918.5
G219M45_CKDL230043734-1A_22GGGVLT3_L8_R1	57935271	57935271	2786070	52416972	2732229	259240	4213630	804704	35326	96.36	17663.0	2106815.0	402352.0
G219M46_CKDL230043734-1A_22GGGVLT3_L8_R1	63966683	63966683	3082707	57874977	3008999	295178	4685485	851140	38433	96.34	19216.5	2342742.5	425570.0
G219M47_CKDL230043734-1A_22GGGVLT3_L8_R1	40996580	40996580	1917195	37131788	1947597	180206	2886115	562592	25271	96.48	12635.5	1443057.5	281296.0
G219M48_CKDL230043734-1A_22GGGVLT3_L8_R1	55225955	55225955	2690897	49941299	2593759	251709	4077991	766325	34060	96.31	17030.0	2038995.5	383162.5
G219M49_CKDL230043734-1A_22GGGVLT3_L8_R1	44565408	44565408	2621688	39898942	2044778	244744	4047680	677791	28417	95.46	14208.5	2023840.0	338895.5
G219M4_CKDL230043734-1A_22GGGVLT3_L8_R1	20658438	20658438	1161968	18418056	1078414	63592	1952404	225422	18926	95.27	9463.0	976202.0	112711.0
G219M50_CKDL230043734-1A_22GGGVLT3_L8_R1	60265029	60265029	3640222	53884778	2740029	316879	5563498	1042574	40614	95.38	20307.0	2781749.0	521287.0
G219M5_CKDL230043734-1A_22GGGVLT3_L8_R1	19578724	19578724	1157505	17444800	976419	60125	1964509	211542	18709	94.98	9354.5	982254.5	105771.0
G219M6_CKDL230043734-1A_22GGGVLT3_L8_R1	15634148	15634148	977503	13907124	749521	49294	1674661	170088	11669	94.64	5834.5	837330.5	85044.0
G219M7_CKDL230043734-1A_22GGGVLT3_L8_R1	18167962	18167962	1248929	16050323	868710	55986	2197694	175404	12788	93.95	6394.0	1098847.0	87702.0
G219M8_CKDL230043734-1A_22GGGVLT3_L8_R1	17782849	17782849	1285759	15684421	812669	53993	2226524	223458	13550	93.74	6775.0	1113262.0	111729.0
G219M9_CKDL230043734-1A_22GGGVLT3_L8_R1	18970438	18970438	1028798	16998402	943238	55921	1764229	168346	13179	95.35	6589.5	882114.5	84173.0
README_Bowtie2.sh	250000	250000								95.16