Sample	total_passed	total_failed	duplicates_passed	duplicates_failed	mapped_passed	mapped_failed	mapped_passed_pct	mapped_failed_pct	paired in sequencing_passed	paired in sequencing_failed	read1_passed	read1_failed	read2_passed	read2_failed	properly paired_passed	properly paired_failed	properly paired_passed_pct	properly paired_failed_pct	with itself and mate mapped_passed	with itself and mate mapped_failed	singletons_passed	singletons_failed	singletons_passed_pct	singletons_failed_pct	with mate mapped to a different chr_passed	with mate mapped to a different chr_failed	with mate mapped to a different chr (mapQ >= 5)_passed	with mate mapped to a different chr (mapQ >= 5)_failed	flagstat_total
flagstat_G219M1	33669730	0	0	0	32016440	0	95.09	nan	33669730	0	16834865	0	16834865	0	31715792	0	94.2	nan	31827396	0	189044	0	0.56	nan	194	0	100	0	33669730
flagstat_G219M10	34842804	0	0	0	33019610	0	94.77	nan	34842804	0	17421402	0	17421402	0	32702070	0	93.86	nan	32827442	0	192168	0	0.55	nan	124	0	96	0	34842804
flagstat_G219M11	36390030	0	0	0	34396840	0	94.52	nan	36390030	0	18195015	0	18195015	0	34086100	0	93.67	nan	34199540	0	197300	0	0.54	nan	372	0	289	0	36390030
flagstat_G219M12	41485270	0	0	0	39091494	0	94.23	nan	41485270	0	20742635	0	20742635	0	38690142	0	93.26	nan	38840148	0	251346	0	0.61	nan	358	0	268	0	41485270
flagstat_G219M13	38756582	0	0	0	35872952	0	92.56	nan	38756582	0	19378291	0	19378291	0	35476468	0	91.54	nan	35609644	0	263308	0	0.68	nan	294	0	95	0	38756582
flagstat_G219M14	37457864	0	0	0	35042066	0	93.55	nan	37457864	0	18728932	0	18728932	0	34691056	0	92.61	nan	34815828	0	226238	0	0.6	nan	304	0	245	0	37457864
flagstat_G219M15	36309568	0	0	0	33631361	0	92.62	nan	36309568	0	18154784	0	18154784	0	33285092	0	91.67	nan	33409592	0	221769	0	0.61	nan	196	0	148	0	36309568
flagstat_G219M16	37870138	0	0	0	35534495	0	93.83	nan	37870138	0	18935069	0	18935069	0	35160296	0	92.84	nan	35309484	0	225011	0	0.59	nan	136	0	59	0	37870138
flagstat_G219M17	35958362	0	0	0	33038050	0	91.88	nan	35958362	0	17979181	0	17979181	0	32658260	0	90.82	nan	32777684	0	260366	0	0.72	nan	442	0	373	0	35958362
flagstat_G219M18	37921926	0	0	0	34961278	0	92.19	nan	37921926	0	18960963	0	18960963	0	34592048	0	91.22	nan	34733832	0	227446	0	0.6	nan	2684	0	2652	0	37921926
flagstat_G219M19	40613710	0	0	0	37927353	0	93.39	nan	40613710	0	20306855	0	20306855	0	37559162	0	92.48	nan	37695306	0	232047	0	0.57	nan	5032	0	4595	0	40613710
flagstat_G219M2	34428266	0	0	0	32805642	0	95.29	nan	34428266	0	17214133	0	17214133	0	32503532	0	94.41	nan	32615980	0	189662	0	0.55	nan	120	0	92	0	34428266
flagstat_G219M20	36236716	0	0	0	33807153	0	93.3	nan	36236716	0	18118358	0	18118358	0	33491468	0	92.42	nan	33623968	0	183185	0	0.51	nan	354	0	330	0	36236716
flagstat_G219M21	36377026	0	0	0	34104195	0	93.75	nan	36377026	0	18188513	0	18188513	0	33781638	0	92.87	nan	33911950	0	192245	0	0.53	nan	606	0	560	0	36377026
flagstat_G219M22	37085620	0	0	0	34208788	0	92.24	nan	37085620	0	18542810	0	18542810	0	33881462	0	91.36	nan	34012942	0	195846	0	0.53	nan	1576	0	1547	0	37085620
flagstat_G219M23	41692680	0	0	0	39114424	0	93.82	nan	41692680	0	20846340	0	20846340	0	38715296	0	92.86	nan	38868178	0	246246	0	0.59	nan	360	0	246	0	41692680
flagstat_G219M24	38620264	0	0	0	36322727	0	94.05	nan	38620264	0	19310132	0	19310132	0	35982578	0	93.17	nan	36125808	0	196919	0	0.51	nan	412	0	319	0	38620264
flagstat_G219M25	40626998	0	0	0	38202868	0	94.03	nan	40626998	0	20313499	0	20313499	0	37833472	0	93.12	nan	37982832	0	220036	0	0.54	nan	344	0	216	0	40626998
flagstat_G219M26	34586340	0	0	0	32208121	0	93.12	nan	34586340	0	17293170	0	17293170	0	31878594	0	92.17	nan	32010214	0	197907	0	0.57	nan	164	0	128	0	34586340
flagstat_G219M27	38379466	0	0	0	35814628	0	93.32	nan	38379466	0	19189733	0	19189733	0	35466888	0	92.41	nan	35604088	0	210540	0	0.55	nan	262	0	168	0	38379466
flagstat_G219M28	36584044	0	0	0	33721200	0	92.17	nan	36584044	0	18292022	0	18292022	0	33402652	0	91.3	nan	33526476	0	194724	0	0.53	nan	204	0	123	0	36584044
flagstat_G219M29	39417140	0	0	0	36334131	0	92.18	nan	39417140	0	19708570	0	19708570	0	36010548	0	91.36	nan	36150848	0	183283	0	0.46	nan	938	0	152	0	39417140
flagstat_G219M3	40668756	0	0	0	38726791	0	95.22	nan	40668756	0	20334378	0	20334378	0	38358378	0	94.32	nan	38492174	0	234617	0	0.58	nan	458	0	288	0	40668756
flagstat_G219M30	35520198	0	0	0	32822871	0	92.41	nan	35520198	0	17760099	0	17760099	0	32506732	0	91.52	nan	32630636	0	192235	0	0.54	nan	392	0	264	0	35520198
flagstat_G219M31	39837986	0	0	0	37187119	0	93.35	nan	39837986	0	19918993	0	19918993	0	36878110	0	92.57	nan	37012930	0	174189	0	0.44	nan	322	0	212	0	39837986
flagstat_G219M32	47383290	0	0	0	43456217	0	91.71	nan	47383290	0	23691645	0	23691645	0	43041830	0	90.84	nan	43217322	0	238895	0	0.5	nan	710	0	593	0	47383290
flagstat_G219M33	46288634	0	0	0	42262995	0	91.3	nan	46288634	0	23144317	0	23144317	0	41851538	0	90.41	nan	42017572	0	245423	0	0.53	nan	542	0	332	0	46288634
flagstat_G219M34	39122968	0	0	0	35921137	0	91.82	nan	39122968	0	19561484	0	19561484	0	35553460	0	90.88	nan	35706530	0	214607	0	0.55	nan	346	0	234	0	39122968
flagstat_G219M35	41399034	0	0	0	38074142	0	91.97	nan	41399034	0	20699517	0	20699517	0	37675506	0	91.01	nan	37831074	0	243068	0	0.59	nan	302	0	201	0	41399034
flagstat_G219M36	45237574	0	0	0	41764557	0	92.32	nan	45237574	0	22618787	0	22618787	0	41348336	0	91.4	nan	41515434	0	249123	0	0.55	nan	376	0	297	0	45237574
flagstat_G219M37	38354098	0	0	0	35504159	0	92.57	nan	38354098	0	19177049	0	19177049	0	35172700	0	91.71	nan	35310970	0	193189	0	0.5	nan	250	0	199	0	38354098
flagstat_G219M38	43424492	0	0	0	40427095	0	93.1	nan	43424492	0	21712246	0	21712246	0	40058426	0	92.25	nan	40216094	0	211001	0	0.49	nan	268	0	183	0	43424492
flagstat_G219M39	39643772	0	0	0	36365650	0	91.73	nan	39643772	0	19821886	0	19821886	0	36007514	0	90.83	nan	36152840	0	212810	0	0.54	nan	262	0	97	0	39643772
flagstat_G219M4	41316876	0	0	0	39364472	0	95.27	nan	41316876	0	20658438	0	20658438	0	38992940	0	94.38	nan	39125776	0	238696	0	0.58	nan	196	0	95	0	41316876
flagstat_G219M40	35759348	0	0	0	32316164	0	90.37	nan	35759348	0	17879674	0	17879674	0	32007646	0	89.51	nan	32140764	0	175400	0	0.49	nan	350	0	201	0	35759348
flagstat_G219M41	35088628	0	0	0	31441913	0	89.61	nan	35088628	0	17544314	0	17544314	0	31130566	0	88.72	nan	31262392	0	179521	0	0.51	nan	280	0	208	0	35088628
flagstat_G219M42	43143320	0	0	0	38513501	0	89.27	nan	43143320	0	21571660	0	21571660	0	38161658	0	88.45	nan	38308130	0	205371	0	0.48	nan	520	0	476	0	43143320
flagstat_G219M43	37597148	0	0	0	33446450	0	88.96	nan	37597148	0	18798574	0	18798574	0	33119834	0	88.09	nan	33271504	0	174946	0	0.47	nan	774	0	517	0	37597148
flagstat_G219M44	43324612	0	0	0	38703323	0	89.33	nan	43324612	0	21662306	0	21662306	0	38325946	0	88.46	nan	38495976	0	207347	0	0.48	nan	578	0	437	0	43324612
flagstat_G219M45	115870542	0	0	0	111656912	0	96.36	nan	115870542	0	57935271	0	57935271	0	110298402	0	95.19	nan	110834160	0	822752	0	0.71	nan	1792	0	1181	0	115870542
flagstat_G219M46	127933366	0	0	0	123247881	0	96.34	nan	127933366	0	63966683	0	63966683	0	121767952	0	95.18	nan	122378800	0	869081	0	0.68	nan	2146	0	1353	0	127933366
flagstat_G219M47	81993160	0	0	0	79107045	0	96.48	nan	81993160	0	40996580	0	40996580	0	78158770	0	95.32	nan	78532476	0	574569	0	0.7	nan	1872	0	1284	0	81993160
flagstat_G219M48	110451910	0	0	0	106373919	0	96.31	nan	110451910	0	55225955	0	55225955	0	105070116	0	95.13	nan	105590990	0	782929	0	0.71	nan	2382	0	1584	0	110451910
flagstat_G219M49	89130816	0	0	0	85083136	0	95.46	nan	89130816	0	44565408	0	44565408	0	83887440	0	94.12	nan	84393250	0	689886	0	0.77	nan	2664	0	1971	0	89130816
flagstat_G219M5	39157448	0	0	0	37192939	0	94.98	nan	39157448	0	19578724	0	19578724	0	36842438	0	94.09	nan	36968480	0	224459	0	0.57	nan	84	0	53	0	39157448
flagstat_G219M50	120530058	0	0	0	114966560	0	95.38	nan	120530058	0	60265029	0	60265029	0	113249614	0	93.96	nan	113904618	0	1061942	0	0.88	nan	4930	0	3787	0	120530058
flagstat_G219M6	31268296	0	0	0	29593635	0	94.64	nan	31268296	0	15634148	0	15634148	0	29313290	0	93.75	nan	29416826	0	176809	0	0.57	nan	112	0	77	0	31268296
flagstat_G219M7	36335924	0	0	0	34138230	0	93.95	nan	36335924	0	18167962	0	18167962	0	33838066	0	93.13	nan	33954524	0	183706	0	0.51	nan	422	0	293	0	36335924
flagstat_G219M8	35565698	0	0	0	33339174	0	93.74	nan	35565698	0	17782849	0	17782849	0	32994180	0	92.77	nan	33105344	0	233830	0	0.66	nan	206	0	134	0	35565698
flagstat_G219M9	37940876	0	0	0	36176647	0	95.35	nan	37940876	0	18970438	0	18970438	0	35883280	0	94.58	nan	35999344	0	177303	0	0.47	nan	364	0	298	0	37940876