FastQCFastQC Report
Fri 9 Jun 2017
SRR1178073_R1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1178073_R1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52175624
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC183700.014.78929544-45
ATCACGA193150.014.09265834-35
GTCGAAC59300.013.926471
TATGCCG215050.012.82253246-47
GATCGTA68850.012.1879745
CGACAAT98500.011.5643571
CGGGAAT82950.011.3290971
CGCGTAT13150.011.1887721
CACGATC234300.010.832849536-37
TGCCGTC268550.010.48854948-49
CTAGCCT202850.010.1311651
ATCTCGT250050.010.03748240-41
CACGTCT289650.010.00889614-15
ACTAGCC151450.09.9858175
CACACGT294900.09.85483112-13
ATCGGAA361300.09.8152192
GATCGGA362550.09.700561
CGATTAG52350.09.5089994
CTGAAAT546450.09.4672221
GGATCGT103500.09.3444134
Produced by FastQC (version 0.11.2)