FastQCFastQC Report
Fri 3 Feb 2017
G115-M4_CTTGTA_AC6GPWANXX_L007_001.R1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameG115-M4_CTTGTA_AC6GPWANXX_L007_001.R1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48110329
Sequences flagged as poor quality0
Sequence length50
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTATG19250.08.68605843
CTCGTAT18750.07.97904942
TCTCGTA19500.07.559289541
CGTATGC22500.07.52937544
GATCGGA27850.06.4087561
ACACGTC37700.05.54336413
CGTCTGA38650.05.407076416
ATCGGAA34450.05.10845042
Produced by FastQC (version 0.11.2)