G116-M11_GGCTAC_BC72YLANXX_L008_001.R1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	G116-M11_GGCTAC_BC72YLANXX_L008_001.R1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	13501322
Sequences flagged as poor quality	0
Sequence length	50
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTACATCTCGTATGC	1628453	12.061433687752947	TruSeq Adapter, Index 11 (100% over 50bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTACAACTCGTATGC	31814	0.2356361843677234	TruSeq Adapter, Index 11 (98% over 50bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTACACCTCGTATGC	31547	0.23365860024670176	TruSeq Adapter, Index 11 (98% over 50bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTACATATCGTATGC	26065	0.1930551689678981	TruSeq Adapter, Index 11 (98% over 50bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTACAGCTCGTATGC	21578	0.15982138637979304	TruSeq Adapter, Index 11 (98% over 50bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	201765	43.84012	1
ATCGGAA	202205	43.679108	2
TCGGAAG	203425	43.6261	3
CGGAAGA	202640	43.55306	4
ACACGTC	205085	43.322315	13
CGTCTGA	204930	43.31	16
ACGTCTG	205410	43.279465	15
GCACACG	205800	43.277603	11
CACACGT	205755	43.219723	12
CACGTCT	206100	43.091885	14
CGTATGC	200855	43.091312	44
TCTCGTA	184545	42.89594	41
TCGTATG	202195	42.88641	43
CTCGTAT	196275	42.877193	42
ACGGCTA	201345	42.85552	32
CGGCTAC	200945	42.85436	33
GTCACGG	202480	42.847748	29
AGTCACG	203455	42.839157	28
ATCTCGT	184710	42.81824	40
TCACGGC	202360	42.80794	30