G116-M12_CTTGTA_BC72YLANXX_L008_001.R1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	G116-M12_CTTGTA_BC72YLANXX_L008_001.R1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	22957416
Sequences flagged as poor quality	0
Sequence length	50
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGC	1770034	7.7100750363194175	TruSeq Adapter, Index 12 (100% over 50bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATATCGTATGC	44215	0.19259571721834898	TruSeq Adapter, Index 12 (98% over 50bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAAACTCGTATGC	34985	0.15239084398697136	TruSeq Adapter, Index 12 (98% over 50bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAACCTCGTATGC	29867	0.13009739423635483	TruSeq Adapter, Index 12 (98% over 50bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAAGCTCGTATGC	23890	0.10406223418175634	TruSeq Adapter, Index 12 (98% over 50bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	223245	43.855103	1
ATCGGAA	223450	43.72223	2
TCGGAAG	224800	43.62854	3
CGGAAGA	224260	43.492146	4
ACACGTC	226615	43.41548	13
CGTCTGA	226685	43.414692	16
ACGTCTG	227255	43.403545	15
CGTATGC	218770	43.371	44
CACGTCT	227700	43.25497	14
CACACGT	228075	43.191563	12
GCACACG	227535	43.188713	11
TCTCGTA	198065	43.170685	41
TCGTATG	220135	43.156147	43
CTCGTAT	210685	43.139168	42
AATCTCG	196665	43.062267	39
ATCTCGT	198050	43.040367	40
GAACTCC	229670	42.55932	21
GTAATCT	198330	42.498928	37
AGTCACC	224305	42.430058	28
TCTGAAC	232050	42.396725	18