G116-M9_GATCAG_BC72YLANXX_L008_001.R1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	G116-M9_GATCAG_BC72YLANXX_L008_001.R1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	23459568
Sequences flagged as poor quality	0
Sequence length	50
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCAGATCTCGTATGC	564395	2.4058200901227167	TruSeq Adapter, Index 9 (100% over 50bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	71650	43.3834	1
CGTATGC	70455	43.26765	44
ATCGGAA	71775	43.199375	2
TCGTATG	70985	42.99119	43
CTCGTAT	67340	42.963913	42
TCTCGTA	62290	42.94967	41
CGATCAG	70070	42.840763	33
CGTCTGA	73100	42.822063	16
GTCACGA	71295	42.75865	29
TCGGAAG	72750	42.75325	3
ACGATCA	70260	42.715527	32
ACACGTC	73425	42.674454	13
CACGATC	70510	42.66077	31
ACGTCTG	73790	42.63922	15
GATCTCG	62245	42.63668	39
ATCTCGT	62690	42.517345	40
CGGAAGA	72715	42.510418	4
TCACGAT	71220	42.51032	30
AGTCACG	72405	42.425125	28
CACGTCT	74560	42.11628	14