RXR_TCPO_Reps_Combined.R1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	RXR_TCPO_Reps_Combined.R1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	30129410
Sequences flagged as poor quality	0
Sequence length	50
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTACATCTCGTATGC	834912	2.7710864567211906	TruSeq Adapter, Index 11 (100% over 50bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	98705	43.345753	1
ATCGGAA	98945	43.10753	2
CGTCTGA	99315	42.9342	16
CGTATGC	98105	42.80886	44
ACGTCTG	99550	42.775356	15
ACACGTC	99875	42.742233	13
ACGGCTA	97470	42.728256	32
TCGGAAG	99950	42.726894	3
CTCGTAT	96845	42.72436	42
TCTCGTA	91755	42.70291	41
CGGCTAC	97115	42.702896	33
TCGTATG	98275	42.701237	43
CGGAAGA	100325	42.47929	4
ATCTCGT	92255	42.414673	40
TCACGGC	98450	42.361774	30
AGTCACG	99350	42.314293	28
CATCTCG	91975	42.31042	39
GTCACGG	98805	42.283104	29
CACGTCT	101050	42.22134	14
CACGGCT	98775	42.13451	31