G129-M9_GATCAG_AC8VLWANXX_L007_001.R1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	G129-M9_GATCAG_AC8VLWANXX_L007_001.R1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	20794591
Sequences flagged as poor quality	0
Sequence length	50
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCAGATCTCGTATGC	1070860	5.149704555381733	TruSeq Adapter, Index 9 (100% over 50bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCAGATATCGTATGC	22044	0.10600833649481252	TruSeq Adapter, Index 9 (98% over 50bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCAGAACTCGTATGC	21998	0.10578712512306686	TruSeq Adapter, Index 9 (98% over 50bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	128105	43.56541	1
ATCGGAA	128675	43.240017	2
CGTATGC	128765	43.018696	44
ACACGTC	130800	42.744194	13
TCGTATG	130060	42.668034	43
TCGGAAG	130265	42.644684	3
CTCGTAT	125630	42.64316	42
CGTCTGA	130910	42.624256	16
ACGTCTG	131370	42.59055	15
CGATCAG	128865	42.522236	33
CACACGT	131630	42.493053	12
ACGATCA	129000	42.477737	32
TCACGAT	129645	42.471085	30
CACGTCT	131910	42.44955	14
GTCACGA	129925	42.425274	29
TCTCGTA	118950	42.351463	41
CACGATC	129720	42.297283	31
CGGAAGA	130825	42.28033	4
AGTCACG	131280	42.20524	28
ATCTCGT	119235	42.165455	40