Basic Statistics
Measure | Value |
---|---|
Filename | GBM108.R1.fastq.83bp.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 60267933 |
Sequences flagged as poor quality | 0 |
Sequence length | 83 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ATTGCGT | 3075 | 1.0004442E-10 | 18.425234 | 44-45 |
TCGCGAG | 1890 | 3.13488E-5 | 17.130692 | 46-47 |
ATCGCGA | 1980 | 4.670887E-5 | 16.352022 | 46-47 |
CGCGATT | 1295 | 4.2504E-5 | 15.62821 | 48-49 |
CGATTAC | 3195 | 5.8418664E-8 | 15.202653 | 48-49 |
CTATCGA | 2470 | 1.861081E-5 | 14.746048 | 44-45 |
CGAATTA | 3120 | 7.393628E-7 | 14.27076 | 48-49 |
CGTTATA | 2650 | 3.6061236E-5 | 13.746927 | 48-49 |
CGTTAGG | 2700 | 4.2990123E-5 | 13.492354 | 48-49 |
TTAGCGA | 3610 | 2.605084E-7 | 13.452536 | 44-45 |
TCGCGAT | 1845 | 0.008936854 | 13.161385 | 46-47 |
TATTCGT | 4150 | 1.0275471E-7 | 12.6772585 | 44-45 |
TGCGTTA | 3550 | 3.1627078E-6 | 12.54039 | 46-47 |
CGTATCG | 3310 | 0.0 | 12.517886 | 3 |
ATTTCGT | 6790 | 0.0 | 12.516405 | 44-45 |
CGACTAT | 3265 | 1.8459512E-5 | 12.397262 | 48-49 |
TTTCGCA | 5280 | 1.2369128E-9 | 12.263548 | 44-45 |
TTTCGTA | 6995 | 0.0 | 12.1495905 | 44-45 |
TTAACGC | 2675 | 6.0077873E-4 | 12.10309 | 44-45 |
CTATCGT | 3040 | 1.3068569E-4 | 11.981164 | 44-45 |