FastQCFastQC Report
Sun 7 Aug 2016
GBM108.R1.fastq.83bp.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameGBM108.R1.fastq.83bp.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences60267933
Sequences flagged as poor quality0
Sequence length83
%GC48

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATTGCGT30751.0004442E-1018.42523444-45
TCGCGAG18903.13488E-517.13069246-47
ATCGCGA19804.670887E-516.35202246-47
CGCGATT12954.2504E-515.6282148-49
CGATTAC31955.8418664E-815.20265348-49
CTATCGA24701.861081E-514.74604844-45
CGAATTA31207.393628E-714.2707648-49
CGTTATA26503.6061236E-513.74692748-49
CGTTAGG27004.2990123E-513.49235448-49
TTAGCGA36102.605084E-713.45253644-45
TCGCGAT18450.00893685413.16138546-47
TATTCGT41501.0275471E-712.677258544-45
TGCGTTA35503.1627078E-612.5403946-47
CGTATCG33100.012.5178863
ATTTCGT67900.012.51640544-45
CGACTAT32651.8459512E-512.39726248-49
TTTCGCA52801.2369128E-912.26354844-45
TTTCGTA69950.012.149590544-45
TTAACGC26756.0077873E-412.1030944-45
CTATCGT30401.3068569E-411.98116444-45