G144-M9-Index-21_GTTTCG_BC9WPLANXX_L008_001.R1.fastq FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	G144-M9-Index-21_GTTTCG_BC9WPLANXX_L008_001.R1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	35978029
Sequences flagged as poor quality	0
Sequence length	50
%GC	44

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCGTAT	1535	0.0	9.019607	44
CGTTTCG	1630	0.0	8.0908785	33
CGTACGA	780	3.274181E-11	7.3420596	2
TCGTACG	645	1.6420017E-8	7.1720138	1
ATCGACG	680	4.7171852E-8	6.7872744	41
ACGACGC	1435	0.0	6.142756	16
CGGTTTT	4190	0.0	6.098534	1
TCTCGTA	1825	0.0	5.900498	43
TCGACGC	830	3.2281423E-7	5.8252087	42
CACGACG	1690	0.0	5.6072702	15
CGACGCT	1820	0.0	5.569663	17
TCCGATC	1860	0.0	5.436732	26
CGTCGAT	610	7.2017056E-4	5.4052887	24
CGGAATC	2595	0.0	5.335645	38
TCGGAAT	2615	0.0	5.2948966	37
TTTCGGA	2825	0.0	5.1351814	35
CGGATTA	1210	2.6522684E-8	5.0974646	1