FastQCFastQC Report
Fri 10 Jun 2016
G95-M6_CTTGTA_L001_R1_001.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameG95-M6_CTTGTA_L001_R1_001.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7912602
Sequences flagged as poor quality0
Sequence length99
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGCAT4306.3484054E-510.9858971
CCGGCAT15200.010.8774831
CCGAAAC13750.010.6503281
CCCGAAT12550.010.5394581
CGCATAT5002.5520705E-510.3926581
GTCGATT7502.6686394E-810.0777291
CGCGTGT7653.626883E-89.8801271
CCGGAAT17550.09.69012451
CGGGAAT13300.09.5899451
CGGGTAT7502.8738577E-79.4478711
CGGAAAT12001.8189894E-129.4478711
CGCAACT7001.142871E-69.4478711
CGATCAC10408.54925E-119.3867453
CGGCTAT8602.208435E-89.3380131
CCGGGAT17250.09.31094551
CGCCCAT15750.09.2979051
ACGATCA11202.7284841E-119.2754072
CGCACGT5153.919686E-49.172691
CGACAGT11353.6379788E-119.15652751
CTCGTTT16650.09.0790361
Produced by FastQC (version 0.11.2)