FastQCFastQC Report
Sat 27 Apr 2019
SRR3157437_R1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3157437_R1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55653575
Sequences flagged as poor quality0
Sequence length51
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTGTCTTAGGTATAGTAAATGTATTGAATCCATCATACGTCACAGAATA2307670.41464901401212767No Hit
CTGGAATTGGACTTCTCAGTGAGACAGGATGGAATGCAGATCACAGAATTT1878270.337493143971434No Hit
CTTAGGTATAGTAAATGTATTGAATCCATCATACGTCACAGAATATTCACC1777580.3194008650836896No Hit
GGCAGCGATTGGCATTGGATAGGTCAATGATATTTTCTCTAAGGATTCCAT1272690.22868072715903695No Hit
GCCATAAGAAAGTTATCATAGTCTGTCTTAGGTATAGTAAATGTATTGAAT1206120.21671923142403698No Hit
ATCAAAGAGAAATTTAAAGAAGTCTTTGATTCTTGATGAGGTATCCTAGGT1204690.21646228476786983No Hit
CATTAATCTTTTCTACATTAAAGTTCCTTCCCGTAGAACTAGCTTCTTCTG1163940.2091402034819866No Hit
CTCCAGAAAAAGTCTAAAGTTGCCATTATCTTCTATCTTTTCTCTTTTGTC1120060.20125571448015694No Hit
GGGTAATCATTTATTGAACAGGAAGAGGAAGAAATTCATGAAAAATTGTCA1085870.19511235351906864No Hit
GGATGGAATGCAGATCACAGAATTTATACTGGGGATGCTGTATGGATAGGA1081380.19430557695529893No Hit
CTCGGGCCTGGAGGCAGCGATTGGCATTGGATAGGTCAATGATATTTTCTC1076600.1934466923283904No Hit
CGGGCCTGGAGGCAGCGATTGGCATTGGATAGGTCAATGATATTTTCTCTA1070480.19234703251318536No Hit
CTAGGTAACATGTGGATAGACTGGAATTGGACTTCTCAGTGAGACAGGATG1027590.184640429657933No Hit
CCATTATCTTCTATCTTTTCTCTTTTGTCAGAGGCCAGGATAATAGTATGC1010620.18159120954943145No Hit
CCAGCCTTTTCTGTTTTGTCAGCAACCATAGATAATTCGGAGCACTCTTCA878580.15786586935340632No Hit
CACAGAATATTCACCAGCCTTTTCTGTTTTGTCAGCAACCATAGATAATTC855590.15373495772733378No Hit
ATCCTAGGTAACATGTGGATAGACTGGAATTGGACTTCTCAGTGAGACAGG831800.14946029972018868No Hit
GTCACAGAATATTCACCAGCCTTTTCTGTTTTGTCAGCAACCATAGATAAT830180.14916921329851676No Hit
CAGGATAATAGTATGCCATTCCCCATTAATCTTTTCTACATTAAAGTTCCT829360.14902187325791738No Hit
GCCTTTTCTGTTTTGTCAGCAACCATAGATAATTCGGAGCACTCTTCATCT821430.1475969872555357No Hit
CCCCATTAATCTTTTCTACATTAAAGTTCCTTCCCGTAGAACTAGCTTCTT762780.13705858069315405No Hit
CTTTTCGTTAATGAGATGAGCCATAAGAAAGTTATCATAGTCTGTCTTAGG755680.1357828315611351No Hit
GAGGTATCCTAGGTAACATGTGGATAGACTGGAATTGGACTTCTCAGTGAG735920.132232295948643No Hit
CCTAGGTAACATGTGGATAGACTGGAATTGGACTTCTCAGTGAGACAGGAT732400.13159981187192377No Hit
ATGGAATGCAGATCACAGAATTTATACTGGGGATGCTGTATGGATAGGAAG719750.129326822221214No Hit
CCCATTAATCTTTTCTACATTAAAGTTCCTTCCCGTAGAACTAGCTTCTTC716540.12875003986716038No Hit
CAGCCTTTTCTGTTTTGTCAGCAACCATAGATAATTCGGAGCACTCTTCAT708640.1273305443540689No Hit
CTCGGCCATAGAGCCCCATCAGCTGGAAGGTTTCCCCATCCTTTTCGTTAA682290.12259589792749162No Hit
CAGAATATTCACCAGCCTTTTCTGTTTTGTCAGCAACCATAGATAATTCGG675600.1213938188157724No Hit
CTACATTAAAGTTCCTTCCCGTAGAACTAGCTTCTTCTGCATGGACACAGA671340.12062836933656104No Hit
CTGGAGGCTCAGGCCATTCTTCATTCTCGGGCCTGGAGGCAGCGATTGGCA658570.11833381772869038No Hit
ATTAATCTTTTCTACATTAAAGTTCCTTCCCGTAGAACTAGCTTCTTCTGC656020.11787562613902161No Hit
CCTGGAGGCAGCGATTGGCATTGGATAGGTCAATGATATTTTCTCTAAGGA654090.11752883799468407No Hit
CGTAGAACTAGCTTCTTCTGCATGGACACAGACTAGGGTCAGTCCCAAACA654040.11751985384586704No Hit
CTGGGGATGCTGTATGGATAGGAAGGGATGATGGTGGAGTCCTGGTGAGAA651930.11714072276578819No Hit
GTCTTAGGTATAGTAAATGTATTGAATCCATCATACGTCACAGAATATTCA642530.11545170278818566No Hit
GTCAATGATATTTTCTCTAAGGATTCCATGCTTCTCACATAGTTGTGCAAA626900.11264325786798063No Hit
GGATGCTGTATGGATAGGAAGGGATGATGGTGGAGTCCTGGTGAGAAGTCT618730.11117524795127716No Hit
CTGTCTTAGGTATAGTAAATGTATTGAATCCATCATACGTCACAGAATATT612990.11014386766708159No Hit
GGACTTCTCAGTGAGACAGGATGGAATGCAGATCACAGAATTTATACTGGG606430.10896514734228663No Hit
CCCATCCTTTTCGTTAATGAGATGAGCCATAAGAAAGTTATCATAGTCTGT599630.10774330310316992No Hit
CTTCATTCTCGGGCCTGGAGGCAGCGATTGGCATTGGATAGGTCAATGATA598560.10755104231848538No Hit
CAGAAAAAGTCTAAAGTTGCCATTATCTTCTATCTTTTCTCTTTTGTCAGA586810.10543976734648225No Hit
ATTATCTTCTATCTTTTCTCTTTTGTCAGAGGCCAGGATAATAGTATGCCA584430.1050121218627914No Hit
CCATAAGAAAGTTATCATAGTCTGTCTTAGGTATAGTAAATGTATTGAATC582500.10466533371845384No Hit
AAGAAAGTTATCATAGTCTGTCTTAGGTATAGTAAATGTATTGAATCCATC578510.10394839864285449No Hit
CCAGGATAATAGTATGCCATTCCCCATTAATCTTTTCTACATTAAAGTTCC576460.10358004854135607No Hit
ATCATACGTCACAGAATATTCACCAGCCTTTTCTGTTTTGTCAGCAACCAT558340.10032419301006269No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.8)