FastQCFastQC Report
Wed 24 Apr 2019
SRR5517145_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5517145_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46569351
Sequences flagged as poor quality0
Sequence length50
%GC50

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTGAAGCTATCTCGTAT10772882.3132982892546643TruSeq Adapter, Index 19 (97% over 38bp)
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCTGAAGCTATCTCGTATG8168621.7540764096111197TruSeq Adapter, Index 19 (97% over 37bp)
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCTGAAGCTAACTCGTATG570090.12241742428405326TruSeq Adapter, Index 19 (97% over 37bp)
AATCGGAAGAGCACACGTCTGAACTCCAGTCACCTGAAGCTATCTCGTAT538390.11561037215227672TruSeq Adapter, Index 12 (97% over 35bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.8)