FastQCFastQC Report
Wed 24 Apr 2019
SRR5517146_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5517146_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38364364
Sequences flagged as poor quality0
Sequence length50
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTTAAGATTAGTGTAGATCT3580640.933324477893078Illumina Single End PCR Primer 1 (96% over 32bp)
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTTAAGATTAGTGTAGATCTC3509710.9148359660021994Illumina Single End PCR Primer 1 (96% over 31bp)
CCCCACTAGCCTCTGGCAAAATGAAGTGGGTAACCTTTCTCCTCCTCCTC436580.11379831554095357No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.8)