FastQCFastQC Report
Thu 6 Jul 2017
RXR_All_Reps_Combined.R1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameRXR_All_Reps_Combined.R1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences158410200
Sequences flagged as poor quality0
Sequence length50
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA53550.09.3720751
CTCGTAT55450.09.00609542
CGTATGC60200.08.25877944
TCGTATG59800.08.1301643
TCTCGTA57800.07.802673341
ATCGGAA67450.07.5345522
CGTCTGA89950.06.08981316
ACACGTC102750.05.352493313
ATCTCGT92550.05.22956740
ACGTCTG112400.05.20615215
TCGGAAG114450.05.0555163
Produced by FastQC (version 0.11.2)