SRR6575448_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR6575448_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	68856
Sequences flagged as poor quality	0
Sequence length	100
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	236	0.34274427791332635	No Hit
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG	132	0.1917044266294876	No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG	102	0.14813523875914952	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	102	0.14813523875914952	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	101	0.14668293249680492	No Hit
CTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAA	98	0.14232601370977113	No Hit
CTTTAATATACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGA	95	0.13796909492273732	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	79	0.11473219472522364	No Hit
GCTAAGAGCATCGAGGGGGCGCCGAGAGGCAAGGGGCGGGGACGGGCGGT	74	0.10747066341350063	No Hit
CCATGGTAGGCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCG	72	0.10456605088881143	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTATAG	40	5.648863E-4	46.98402	3
CATGGGT	120	1.8189894E-12	43.068687	4
CTGGGTA	25	0.0016996666	37.58722	68-69
GTATCAA	630	0.0	35.823368	1
GGGTACC	80	1.1455972E-5	35.238018	7
CATGGGC	85	1.735084E-5	33.16519	4
TACATGG	985	0.0	32.93659	2
ATGGGTA	100	1.3894896E-6	32.888817	5
ACATGGG	1005	0.0	32.72519	3
GTACATG	1000	0.0	32.442535	1
ATGGGAG	225	0.0	31.322683	5
AACGCAG	735	0.0	30.683445	6
CATGGGA	695	0.0	29.745281	4
ATCAACG	760	0.0	29.67412	3
GGTACCT	80	4.7443266E-4	29.365013	8
TGGGTAC	80	4.7443266E-4	29.365013	6
ATCCAGG	65	0.006124781	28.913246	6
TCAACGC	780	0.0	28.913246	4
GGGATGG	65	0.006124781	28.913246	7
ATGGGAT	180	2.2919266E-10	28.712458	5