SRR6575840_2.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR6575840_2.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	740720
Sequences flagged as poor quality	0
Sequence length	100
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC	1654	0.22329625229506428	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	1311	0.17698995571876014	No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT	1225	0.16537963062965763	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	1168	0.15768441516362458	No Hit
GTATAAAATCAGGCAGTTTTTGATCACGTTTATTGTAAGCCGTCAGCATC	1074	0.14499405983367533	No Hit
CAATTGATATTAGATATTTTTGCAAAGCGGGCGAGAACGAGAGAAGGCAA	988	0.13338373474457285	No Hit
GACCATAATGTGATCCCTTCCGGCGGTCGGTATAAAATCAGGCAGTTTTT	923	0.12460848903769306	No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA	844	0.11394319040933146	No Hit
CCTATTAGGAGCCGATCGTGCTTGTGCGCCGGCAAAACTTTTCAGGCGAA	817	0.1102980883464737	No Hit
GTTAATAATTCTGGCAATTCGTCTCCACACTAGAAGTCGACGAACAACGA	814	0.10989307700615618	No Hit
GTATAAGGTGATCGCAGGTTGTGCAATCATTGCTCAAAAGGGTGTACACC	786	0.10611297116319257	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGATA	60	8.822721E-5	39.1654	8
GTACTAG	355	0.0	35.82028	1
CTTAAGA	85	1.754331E-5	33.175396	2
ACCTAAG	215	0.0	32.8584	1
TTAAGAC	75	3.2750465E-4	31.332321	3
TCTAACG	255	0.0	31.332321	2
GTATAAG	435	0.0	29.232643	1
GGGTACG	65	0.0060910825	28.982792	1
TAGTACT	720	0.0	28.721294	4
CTAACGC	280	0.0	28.534792	3
CTAGTAC	810	0.0	28.43118	3
CCTAGTA	830	0.0	27.746092	2
TATTAAG	85	6.815072E-4	27.646164	2
AGTACGA	85	6.815072E-4	27.646164	9
GTACTGT	755	0.0	27.389843	6
CTGTGCG	780	0.0	27.11451	9
CATGGGG	1710	0.0	26.38511	4
CGCCTAC	305	0.0	26.195875	7
GTATCAA	2630	0.0	26.145124	1
GTCTAAC	325	0.0	26.084513	1