SRR6575860_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR6575860_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1368479
Sequences flagged as poor quality	0
Sequence length	100
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ACCTAAGACAGACTATGATAACTTTCTTATGGCTCATCTCATTAACGAAA	2830	0.20679893516816847	No Hit
CTATTATCCTGGCCTCTGACAAAAGAGAAAAGATAGAAGATAATGGCAAC	2364	0.17274653100266793	No Hit
GTCTTAGGTATAGTAAATGTATTGAATCCATCATACGTCACAGAATATTC	2268	0.1657314434492601	No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA	1681	0.12283710601331843	No Hit
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG	1666	0.12174099858309846	No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC	1648	0.12042566966683449	No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT	1610	0.11764886417694388	No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA	1610	0.11764886417694388	No Hit
GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA	1595	0.11655275674672391	No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA	1571	0.11479898485837196	No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT	1507	0.11012225982276673	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	2005	0.0	51.816765	1
GGTATCA	915	0.0	39.560524	1
TCAACGC	2670	0.0	38.021023	4
AATCGCG	50	0.0017024592	37.598568	94
ATCAACG	2745	0.0	36.81098	3
CAACGCA	2840	0.0	35.910606	5
TAGGTAT	765	0.0	35.63263	5
AGGTATA	770	0.0	35.40125	6
CTTAGGT	760	0.0	35.248657	3
TTAGGTA	785	0.0	34.724792	4
GTCTTAG	980	0.0	34.53813	1
GGTATAG	805	0.0	34.445892	7
AACGCAG	2990	0.0	34.109066	6
CTAACGC	60	0.004162033	31.332138	3
GTATAGT	880	0.0	30.442022	8
TATAGTA	895	0.0	29.931822	9
GTACATG	5680	0.0	29.62969	1
TACATGG	5750	0.0	29.105467	2
TATCAAC	3595	0.0	28.637667	2
ACATGGG	5945	0.0	28.617918	3