SRR6575940_2.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR6575940_2.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	801617
Sequences flagged as poor quality	0
Sequence length	100
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ACCTAAGACAGACTATGATAACTTTCTTATGGCTCATCTCATTAACGAAA	2935	0.3661349497328525	No Hit
CTATTATCCTGGCCTCTGACAAAAGAGAAAAGATAGAAGATAATGGCAAC	1662	0.20733093235298156	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1196	0.14919843266796987	No Hit
GTCTTAGGTATAGTAAATGTATTGAATCCATCATACGTCACAGAATATTC	1097	0.13684839518123992	No Hit
GAATTTATACTGGGGATGCTGTATGGATAGGAAGGGATGATGGTGGAGTC	948	0.11826096502444434	No Hit
TCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCGGCGGCGTTATT	928	0.1157660079564181	No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA	923	0.11514226868941152	No Hit
ATCCTAGGTAACATGTGGATAGACTGGAATTGGACTTCTCAGTGAGACAG	913	0.1138947901553984	No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA	902	0.11252256376798396	No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC	842	0.10503769256390522	No Hit
GTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCA	810	0.10104576125506319	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	2505	59.62349	1
GGTATCA	865	57.192493	1
ATCAACG	3425	43.09274	3
TCAACGC	3470	42.5339	4
CAACGCA	3485	42.48305	5
TATCAAC	3530	42.21041	2
AACGCAG	3630	41.045033	6
ACGCAGA	4250	34.72118	7
CGCAGAG	4265	34.70925	8
GCAGAGT	4515	32.579197	9
GGTAATC	260	30.727648	8
ATGGGAG	960	29.865276	5
GTACATG	4960	29.637306	1
AAGGGTA	255	29.49088	5
CTTAGGT	470	29.002483	3
TACATGG	5110	28.883099	2
ACATGGG	5110	28.699131	3
AGGTATA	475	28.695402	6
TAGGTAT	485	28.103745	5
TCTTAGG	655	27.98713	2