SRR6576049_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR6576049_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1523262
Sequences flagged as poor quality	0
Sequence length	100
%GC	51

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT	1799	0.11810181045676975	No Hit
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG	1790	0.11751097316154412	No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA	1716	0.11265297762302216	No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA	1707	0.11206214032779653	No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC	1694	0.11120870867913728	No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT	1594	0.1046438498432968	No Hit
GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA	1590	0.10438125548986321	No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA	1552	0.10188660913224383	No Hit
GTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGT	1540	0.10109882607194298	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	735	0.0	59.48112	1
GTATCAA	2415	0.0	59.17524	1
TCAACGC	3030	0.0	46.68825	4
ATCAACG	3110	0.0	45.336147	3
CAACGCA	3170	0.0	44.626312	5
AACGCAG	3250	0.0	43.67243	6
TAACGCA	45	0.0010142218	41.77642	4
TATCAAC	3950	0.0	36.06028	2
ACGCAGA	4060	0.0	35.075214	7
CGCAGAG	4425	0.0	32.182007	8
GTACATG	5975	0.0	31.706675	1
TACATGG	6060	0.0	30.563786	2
ACATGGG	6045	0.0	30.47709	3
GCAGAGT	5005	0.0	28.922136	9
GCGTAGT	100	5.3174987E-5	28.205564	1
AGAGTAC	4190	0.0	24.452667	10-11
CATGGGG	3580	0.0	24.155642	4
ACCTAAG	240	2.6193447E-10	23.504637	1
ATGGGAG	1720	0.0	23.225988	5
CATGGGA	2905	0.0	22.973434	4