SRR6576360_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR6576360_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	158296
Sequences flagged as poor quality	0
Sequence length	100
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	388	0.2451104260372972	No Hit
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG	344	0.217314398342346	No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG	247	0.1560367918330217	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	211	0.1332945873553343	No Hit
CTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAA	194	0.1225552130186486	No Hit
CTTTAATATACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGA	189	0.11939657350785869	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	187	0.11813311770354272	No Hit
GCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGGCCCCGCGGGA	174	0.10992065497548896	No Hit
GCTAAGAGCATCGAGGGGGCGCCGAGAGGCAAGGGGCGGGGACGGGCGGT	169	0.10676201546469906	No Hit
GTCCTGTATTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTA	162	0.10233992014959316	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAAACGC	45	1.6012167E-5	52.257187	2
AAACGCA	45	1.6102356E-5	52.207657	3
GCAAACG	55	5.241626E-5	42.75588	1
GTACATG	1770	0.0	40.920033	1
TACATGG	1800	0.0	40.238033	2
ATGGGAT	295	0.0	39.819397	5
CATGGGC	215	0.0	39.33786	4
ACATGGG	1835	0.0	38.15284	3
GACGGTA	50	0.0016999244	37.58951	8
CATGGGA	1070	0.0	36.008644	4
TGGGATC	95	9.402902E-7	34.621918	6
TACGACG	55	0.0027136765	34.172283	5
ACGGTAT	55	0.0027136765	34.172283	9
TGGGATA	85	1.7486167E-5	33.167217	6
ATGGGAG	355	0.0	31.765783	5
GTTATAT	60	0.004136664	31.354311	1
ATGGGCG	75	3.2682356E-4	31.32459	5
CGACGGT	60	0.0041559194	31.32459	7
ACGACGG	60	0.0041559194	31.32459	6
CATGGGT	320	0.0	30.835146	4