SRR6576605_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR6576605_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	106005
Sequences flagged as poor quality	0
Sequence length	100
%GC	48

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG	341	0.32168293948398663	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	259	0.24432809773123912	No Hit
CTTTAATATACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGA	233	0.219800952785246	No Hit
CTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAA	231	0.2179142493278619	No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG	200	0.18867034573840857	No Hit
GCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGGCCCCGCGGGA	185	0.17452006980802792	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	181	0.17074666289325977	No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA	175	0.1650865525211075	No Hit
GTCCTGTATTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTA	166	0.1565963869628791	No Hit
TTCTAGAGCTAATACATGCCGACGGGCGCTGACCCCCCTTCCCGGGGGGG	157	0.14810622140465074	No Hit
GTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGT	152	0.14338946276119052	No Hit
CTCTAGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCC	151	0.14244611103249846	No Hit
GCTAAGAGCATCGAGGGGGCGCCGAGAGGCAAGGGGCGGGGACGGGCGGT	151	0.14244611103249846	No Hit
GGGCGGGGACGGGCGGTGACTCGCCTCGCGGCGGACCGCCCGCCCGCTCC	143	0.13489929720296212	No Hit
GAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTAC	131	0.12357907645865762	No Hit
ATACAGGACTCTTTCGAGGCCCTGTAATTGGAATGAGTCCACTTTAAATC	128	0.1207490212725815	No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC	126	0.1188623178151974	No Hit
GCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACGCACGGC	125	0.11791896608650536	No Hit
GTATTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTG	123	0.11603226262912128	No Hit
GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA	123	0.11603226262912128	No Hit
GATTTAAAGTGGACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTAT	120	0.11320220744304516	No Hit
GTATCAACGCAGAGTACATGGGTACCTGGTTGATCCTGCCAGTAGCATAT	119	0.11225885571435311	No Hit
CTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAGGC	119	0.11225885571435311	No Hit
CTTTTTAACTGCAGCAACTTTAATATACGCTATTGGAGCTGGAATTACCG	117	0.11037215225696902	No Hit
AGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCCATTC	117	0.11037215225696902	No Hit
CCATGGTAGGCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCG	115	0.10848544879958494	No Hit
CCAATGGATCCTCGTTAAAGGATTTAAAGTGGACTCATTCCAATTACAGG	114	0.10754209707089289	No Hit
AGCTAATACATGCCGACGGGCGCTGACCCCCCTTCCCGGGGGGGGATGCG	114	0.10754209707089289	No Hit
AGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACGCACGG	111	0.10471204188481677	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTACTTG	20	0.0021560027	70.51274	1
GGGCGTC	25	0.0052289953	56.383583	7
ATGGGAC	55	5.259606E-5	42.714836	5
GTATAAA	60	8.76061E-5	39.173744	1
ATGGGAG	185	0.0	38.09702	5
CCACAAG	25	0.0017013293	37.589054	80-81
TCTAGGA	65	1.4033567E-4	36.16038	2
GTACATG	1250	0.0	33.846115	1
TACATGG	1250	0.0	33.470047	2
ACATGGG	1235	0.0	32.338764	3
TTGCAAT	60	0.004150027	31.324215	7
TGGGAAA	60	0.004150027	31.324215	6
CATGGGA	765	0.0	30.095814	4
TGGGAGT	80	4.760104E-4	29.36645	6
TAATTGC	65	0.0061380635	28.91466	4
ATGGGAT	165	2.908564E-9	28.476557	5
CATGGGT	240	0.0	27.408688	4
GCCTAGT	70	0.008792769	26.861994	1
AATTGCA	70	0.008813041	26.849323	5
CTCGGAA	35	0.008832602	26.849323	20-21

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content