SRR6576888_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR6576888_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1295215
Sequences flagged as poor quality	0
Sequence length	100
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ACCTAAGACAGACTATGATAACTTTCTTATGGCTCATCTCATTAACGAAA	4436	0.3424914010415259	No Hit
GTCTTAGGTATAGTAAATGTATTGAATCCATCATACGTCACAGAATATTC	3087	0.23833880861478593	No Hit
CTATTATCCTGGCCTCTGACAAAAGAGAAAAGATAGAAGATAATGGCAAC	2199	0.1697787625992596	No Hit
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG	1649	0.12731477013468806	No Hit
ATCCTAGGTAACATGTGGATAGACTGGAATTGGACTTCTCAGTGAGACAG	1526	0.11781827727442935	No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA	1505	0.11619692483487297	No Hit
GAATTTATACTGGGGATGCTGTATGGATAGGAAGGGATGATGGTGGAGTC	1413	0.10909385700443555	No Hit
CTATTATCCTGGCCTCTGACAAGAGAGAAAAGATAGAAGATAATGGCAAC	1399	0.10801295537806466	No Hit
GTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGT	1385	0.10693205375169373	No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC	1376	0.1062371884204553	No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA	1363	0.10523349405311087	No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT	1301	0.10044664399346827	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	670	62.4519	1
GTATCAA	2525	51.389942	1
TCAACGC	2795	45.72629	4
ATCAACG	2855	44.76532	3
CAACGCA	2905	43.99483	5
AACGCAG	3010	42.61623	6
TATCAAC	3370	38.22532	2
GTCTTAG	1175	36.010994	1
CTTAGGT	1025	33.922417	3
GTACATG	5205	33.781685	1
TACATGG	5210	33.659023	2
TAGGTAT	1025	33.464005	5
TTAGGTA	1050	33.114735	4
ACGCAGA	3920	32.72318	7
CGCAGAG	3960	32.273983	8
ACATGGG	5515	31.267954	3
AAGGGTA	470	30.99151	5
GGTAATC	460	30.643778	8
TCTTAGG	1325	30.514973	2
GCAGAGT	4300	29.83136	9