SRR6577020_2.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR6577020_2.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	731543
Sequences flagged as poor quality	0
Sequence length	100
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ACCTAAGACAGACTATGATAACTTTCTTATGGCTCATCTCATTAACGAAA	2807	0.3837095016970978	No Hit
GTCTTAGGTATAGTAAATGTATTGAATCCATCATACGTCACAGAATATTC	1634	0.22336349332848512	No Hit
CTATTATCCTGGCCTCTGACAAAAGAGAAAAGATAGAAGATAATGGCAAC	1535	0.20983045425901145	No Hit
GAATTTATACTGGGGATGCTGTATGGATAGGAAGGGATGATGGTGGAGTC	1077	0.1472230613921533	No Hit
CTATTATCCTGGCCTCTGACAAGAGAGAAAAGATAGAAGATAATGGCAAC	1011	0.1382010353458375	No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT	847	0.1157826675943861	No Hit
ATCCTATTCCCTACCAAAATGAAGATGCTGCTGCTGCTGTGTTTGGGGCT	780	0.1066239441837322	No Hit
ATCCTAGGTAACATGTGGATAGACTGGAATTGGACTTCTCAGTGAGACAG	779	0.10648724681939407	No Hit
ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCG	768	0.10498357581167478	No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA	747	0.1021129311605743	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	340	0.0	60.98252	1
GTATCAA	1315	0.0	55.9024	1
TCAACGC	1655	0.0	42.314598	4
CAACGCA	1710	0.0	40.953606	5
ATCAACG	1715	0.0	40.83421	3
GGTAATC	210	0.0	40.280586	8
AACGCAG	1760	0.0	39.79015	6
GCCGATA	50	0.0017015437	37.600353	2
AGGTATA	520	0.0	37.058044	6
GGTATAG	535	0.0	36.01411	7
TAGGTAT	550	0.0	35.89125	5
TATCAAC	2010	0.0	35.308792	2
CTTAGGT	565	0.0	34.106518	3
GTACATG	3090	0.0	33.24525	1
TTAGGTA	600	0.0	32.90031	4
TACATGG	3090	0.0	32.85468	2
GTCTTAG	700	0.0	32.312817	1
ACATGGG	3185	0.0	31.579576	3
GCTTATA	105	2.0638563E-6	31.33363	2
GTAATCA	330	0.0	31.329346	9